2025

National COVID Cohort Collaborative data enhancements: a path for expanding common data models.

[DOI]

Kellie M. Walters

,

,

,

Stephanie S. Hong

,

Elizabeth Kelly

,

,

,

Robert T. Miller

,

,

Matvey B. Palchuk

,

,

,

,

Alfred (Jerrod) Anzalone

,

,

,

,

,

Andrew E. Williams

,

Andrew Southerland

,

Andrew T. Girvin

,

,

Anjali A Sharathkumar

,

Benjamin R. C. Amor

,

,

Brian Hendricks

,

,

Caleb Alexander

,

Carolyn T. Bramante

,

Cavin Ward-Caviness

,

Charisse R. Madlock-Brown

,

Christine Suver

,

Christopher G. Chute

,

Christopher Dillon

,

,

,

,

,

,

David A. Eichmann

,

,

,

,

,

Elizabeth Zampino

,

Emily Carlson Marti

,

,

Farrukh M. Koraishy

,

Federico Mariona

,

,

,

,

Harold P. Lehmann

,

,

Hemalkumar Mehta

,

,

,

J. W. Awori Hayanga

,

Jami Pincavitch

,

,

Jeremy Richard Harper

,

,

,

,

,

,

,

,

Jomol P. Mathew

,

,

Julie A. McMurry

,

,

,

,

Katie Rebecca Bradwell

,

,

Kenneth R. Gersing

,

Kenrick Dwain Cato

,

Kimberly Murray

,

Lavance Northington

,

Lee Allan Pyles

,

Leonie Misquitta

,

Lesley Cottrell

,

Lili M. Portilla

,

,

Mark M. Bissell

,

,

Mary Morrison Saltz

,

Melissa A. Haendel

,

,

Meredith Temple-O'Connor

,

Michael G. Kurilla

,

,

,

Nicole Garbarini

,

Noha Sharafeldin

,

,

Patricia A. Francis

,

Penny Wung Burgoon

,

Peter N. Robinson

,

Philip R. O. Payne

,

,

,

Rebecca Erwin-Cohen

,

,

Richard A. Moffitt

,

,

Rishi Kamaleswaran

,

,

,

,

Samuel Bozzette

,

Sandeep Mallipattu

,

Satyanarayana Vedula

,

,

Shawn T. O'Neil

,

,

,

Tellen D. Bennett

,

Tiffany Callahan

,

,

,

,

Vignesh Subbian

,

Warren A. Kibbe

,

Wenndy Hernandez

,

,

,

William Hillegass

,

Xiaohan Tanner Zhang

J. Am. Medical Informatics Assoc., 2025

2024

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

[DOI]

J. Biomed. Semant., December, 2024

Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs.

[DOI]

npj Digit. Medicine, 2024

CurateGPT: A flexible language-model assisted biocuration tool.

[DOI]

J. Harry Caufield

,

,

Shawn T. O'Neil

,

Justin T. Reese

,

Marcin P. Joachimiak

,

,

,

Madan Krishnamurthy

,

James A. McLaughlin

,

,

Melissa A. Haendel

,

Peter N. Robinson

,

Christopher J. Mungall

CoRR, 2024

2023

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

[DOI]

CoRR, 2023

2022

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).

[DOI]

Jason A. Thomas

,

Randi E. Foraker

,

,

,

Philip R. O. Payne

,

,

Melissa A. Haendel

,

Christopher G. Chute

,

Kenneth R. Gersing

,

,

Tellen D. Bennett

,

David A. Eichmann

,

,

Warren A. Kibbe

,

,

,

Peter N. Robinson

,

,

,

,

Christine Suver

,

,

,

Stephanie S. Hong

,

,

Harold P. Lehmann

,

Richard A. Moffitt

,

,

Matvey B. Palchuk

,

Xiaohan Tanner Zhang

,

,

Benjamin R. C. Amor

,

Mark M. Bissell

,

,

Andrew T. Girvin

,

,

Robert T. Miller

,

Kellie M. Walters

,

,

,

,

Racquel R. Dietz

,

,

Patricia A. Francis

,

,

,

Andrew J. Neumann

,

Shawn T. O'Neil

,

,

Andréa M. Volz

,

Elizabeth Zampino

,

Christopher P. Austin

,

Samuel Bozzette

,

,

Nicole Garbarini

,

Michael G. Kurilla

,

,

,

Meredith Temple-O'Connor

,

Katie Rebecca Bradwell

,

,

,

Mary Morrison Saltz

,

Julie A. McMurry

,

Carolyn T. Bramante

,

Jeremy Richard Harper

,

Wenndy Hernandez

,

Farrukh M. Koraishy

,

Federico Mariona

,

Saidulu Mattapally

,

,

Satyanarayana Vedula

,

,

,

Ofer Mendelevitch

J. Am. Medical Informatics Assoc., 2022

2021

TidyTensor: Utilities for multidimensional arrays as named hierarchical structures.

[DOI]

Shawn T. O'Neil

J. Open Source Softw., 2021

2016

Newsvendor Problems with Demand Shocks and Unknown Demand Distributions.

[DOI]

Shawn T. O'Neil

,

,

,

Decis. Sci., 2016

2015

Implementing Persistent O(1) Stacks and Queues in R.

[DOI]

Shawn T. O'Neil

R J., 2015

2013

The topology aware file distribution problem.

[DOI]

Shawn T. O'Neil

,

Amitabh Chaudhary

,

,

J. Comb. Optim., 2013

2011

Robust haplotype reconstruction of eukaryotic read data with Hapler.

[DOI]

Shawn T. O'Neil

,

Scott J. Emrich

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2008

Comparing Online Learning Algorithms to Stochastic Approaches for the Multi-Period Newsvendor Problem.

[DOI]

Shawn T. O'Neil

,

Amitabh Chaudhary

Proceedings of the Tenth Workshop on Algorithm Engineering and Experiments, 2008