Accelerating bioinformatics applications on CUDA-enabled multi-GPU systems.
PhD thesis, 2023
Faster Segmented Sort on GPUs.
Proceedings of the Euro-Par 2023: Parallel Processing - 29th International Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 28, 2023
FMapper: Scalable read mapper based on succinct hash index on SunWay TaihuLight.
J. Parallel Distributed Comput., 2022
General-purpose GPU hashing data structures and their application in accelerated genomics.
J. Parallel Distributed Comput., 2022
RabbitQCPlus: More Efficient Quality Control for Sequencing Data.
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Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
MetaCache-GPU: Ultra-Fast Metagenomic Classification.
Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021
A big data approach to metagenomics for all-food-sequencing.
BMC Bioinform., 2020
WarpCore: A Library for fast Hash Tables on GPUs.
Proceedings of the 27th IEEE International Conference on High Performance Computing, 2020
Gossip: Efficient Communication Primitives for Multi-GPU Systems.
Proceedings of the 48th International Conference on Parallel Processing, 2019
Suffix Array Construction on Multi-GPU Systems.
Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing, 2019
SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures.
Proceedings of the 47th International Conference on Parallel Processing, 2018
cuBool: Bit-Parallel Boolean Matrix Factorization on CUDA-Enabled Accelerators.
Proceedings of the 24th IEEE International Conference on Parallel and Distributed Systems, 2018
Accelerating metagenomic read classification on CUDA-enabled GPUs.
BMC Bioinform., 2017