A Gaussian Filter-Based 3D Registration Method for Series Section Electron Microscopy.
Proceedings of the AAAI-25, Sponsored by the Association for the Advancement of Artificial Intelligence, February 25, 2025
Highly efficient clustering of long-read transcriptomic data with GeLuster.
Bioinform., February, 2024
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining.
J. Comput. Biol., 2024
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval.
Genom. Proteom. Bioinform., 2024
GFPack++: Improving 2D Irregular Packing by Learning Gradient Field with Attention.
CoRR, 2024
UPicker: a semi-supervised particle picking transformer method for cryo-EM micrographs.
Briefings Bioinform., 2024
Few-shot classification of Cryo-ET subvolumes with deep Brownian distance covariance.
Briefings Bioinform., 2024
Serial Section Microscopy Image Inpainting Guided by Axial Optical Flow.
Proceedings of the 32nd ACM International Conference on Multimedia, MM 2024, Melbourne, VIC, Australia, 28 October 2024, 2024
A physics-informed convolutional neural network for the simulation and prediction of two-phase Darcy flows in heterogeneous porous media.
J. Comput. Phys., March, 2023
CryoAlign: feature-based method for global and local 3D alignment of EM density maps.
CoRR, 2023
SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs.
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023
Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network.
Bioinform., October, 2022
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Neighborhood-aware Geometric Encoding Network for Point Cloud Registration.
CoRR, 2022
Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer.
Bioinform., 2022
A novel constrained reconstruction model towards high-resolution subtomogram averaging.
Bioinform., 2021
Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints.
Bioinform., 2021
TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs.
Briefings Bioinform., 2021
Self-Supervised Cryo-Electron Tomography Volumetric Image Restoration from Single Noisy Volume with Sparsity Constraint.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021
A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography.
BMC Bioinform., 2020
Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing.
Bioinform., 2020
Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
PIXER: an automated particle-selection method based on segmentation using a deep neural network.
BMC Bioinform., 2019
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction.
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Bioinform., 2019
A joint method for marker-free alignment of tilt series in electron tomography.
Bioinform., 2019
DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy.
Bioinform., 2018
DeepSimulator: a deep simulator for Nanopore sequencing.
Bioinform., 2018
A fast fiducial marker tracking model for fully automatic alignment in electron tomography.
Bioinform., 2018
An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing.
Bioinform., 2018
Fiducial marker detection via deep learning approach for electron tomography.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Iterative Methods in Large Field Electron Microscope Tomography.
SIAM J. Sci. Comput., 2013
QoS Routing in General Petersen-Torus Networks: A Case Study.
J. Convergence Inf. Technol., 2010