2024
MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline.
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Neuroinformatics, April, 2024
Secure Federated Learning Across Heterogeneous Cloud and High-Performance Computing Resources: A Case Study on Federated Fine-Tuning of LLaMA 2.
Comput. Sci. Eng., 2024
Gen-SIS: Generative Self-augmentation Improves Self-supervised Learning.
CoRR, 2024
Advances in APPFL: A Comprehensive and Extensible Federated Learning Framework.
CoRR, 2024
Advances in Privacy Preserving Federated Learning to Realize a Truly Learning Healthcare System.
Proceedings of the 5th IEEE International Conference on Trust, 2024
AI Data Readiness Inspector (AIDRIN) for Quantitative Assessment of Data Readiness for AI.
Proceedings of the 36th International Conference on Scientific and Statistical Database Management, 2024
FedCompass: Efficient Cross-Silo Federated Learning on Heterogeneous Client Devices Using a Computing Power-Aware Scheduler.
Proceedings of the Twelfth International Conference on Learning Representations, 2024
Privacy-Preserving Federated Learning for Science: Challenges and Research Directions.
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Proceedings of the IEEE International Conference on Big Data, 2024
2023
Enabling End-to-End Secure Federated Learning in Biomedical Research on Heterogeneous Computing Environments with APPFLx.
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CoRR, 2023
APPFLx: Providing Privacy-Preserving Cross-Silo Federated Learning as a Service.
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Proceedings of the 19th IEEE International Conference on e-Science, 2023
2022
The Case for Optimized Edge-Centric Tractography at Scale.
Frontiers Neuroinformatics, 2022
FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective.
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CoRR, 2022
APPFL: Open-Source Software Framework for Privacy-Preserving Federated Learning.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
2020
Using the FACE-IT portal and workflow engine for operational food quality prediction and assessment: An application to mussel farms monitoring in the Bay of Napoli, Italy.
Future Gener. Comput. Syst., 2020
2019
Big Data Bags: A Scalable Packaging Format for Science.
Proceedings of Workshop on Research Objects (RO2019), 2019
2018
Scalable pCT Image Reconstruction Delivered as a Cloud Service.
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IEEE Trans. Cloud Comput., 2018
Reproducible big data science: A case study in continuous FAIRness.
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Proceedings of Workshop on Research Objects (RO2018), 2018
2017
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.
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J. Biomed. Informatics, 2017
Cost-Aware Cloud Profiling, Prediction, and Provisioning as a Service.
IEEE Cloud Comput., 2017
2016
Science as a Service [Guest editors' introduction].
Comput. Sci. Eng., 2016
Applications of the FACE-IT Data Science Portal and Workflow Engine for Operational Food Quality Prediction and Assessment: Mussel Farm Monitoring in the Bay of Napoli, Italy.
Proceedings of the 11th Workshop on Workflows in Support of Large-Scale Science co-located with The International Conference for High Performance Computing, 2016
An Automated Tool Profiling Service for the Cloud.
Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets.
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Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016
2015
Big biomedical data as the key resource for discovery science.
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J. Am. Medical Informatics Assoc., 2015
PDACS: A Portal for Data Analysis Services for Cosmological Simulations.
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Comput. Sci. Eng., 2015
FACE-IT: A science gateway for food security research.
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Concurr. Comput. Pract. Exp., 2015
The Globus Galaxies platform: delivering science gateways as a service.
Concurr. Comput. Pract. Exp., 2015
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.
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Bioinform., 2015
Cost-Aware Cloud Provisioning.
Proceedings of the 11th IEEE International Conference on e-Science, 2015
Cost-Aware Elastic Cloud Provisioning for Scientific Workloads.
Proceedings of the 8th IEEE International Conference on Cloud Computing, 2015
2014
Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses.
J. Biomed. Informatics, 2014
Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services.
Concurr. Comput. Pract. Exp., 2014
PDACS: a portal for data analysis services for cosmological simulations.
Proceedings of the 9th Gateway Computing Environments Workshop, 2014
A cloud-based image analysis gateway for traumatic brain injury research.
Proceedings of the 9th Gateway Computing Environments Workshop, 2014
2013
Experiences in building a next-generation sequencing analysis service using galaxy, globus online and Amazon web service.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013
Distributed tools deployment and management for multiple galaxy instances in globus genomics.
Proceedings of WORKS 2013: 8th Workshop On Workflows in Support of Large-Scale Science, 2013
Science as a service: how on-demand computing can accelerate discovery.
Proceedings of the ScienceCloud'13, 2013
Enabling multi-task computation on Galaxy-based gateways using swift.
Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013
2012
Deploying Bioinformatics Workflows on Clouds with Galaxy and Globus Provision.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012
2011
Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).
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J. Am. Medical Informatics Assoc., 2011
Toward Semantics Empowered Biomedical Web Services.
Proceedings of the IEEE International Conference on Web Services, 2011
Improving the efficiency of subset queries on raster images.
Proceedings of the 2011 Second International Workshop on High Performance and Distributed Geographic Information Systems, 2011
Recommend-As-You-Go: A Novel Approach Supporting Services-Oriented Scientific Workflow Reuse.
Proceedings of the IEEE International Conference on Services Computing, 2011
ServiceMap: Providing Map and GPS Assistance to Service Composition in Bioinformatics.
Proceedings of the IEEE International Conference on Services Computing, 2011
Providing Map and GPS Assistance to Service Composition in Bioinformatics.
Proceedings of the IEEE International Conference on Services Computing, 2011
2010
A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid.
Concurr. Comput. Pract. Exp., 2010
caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid.
BMC Bioinform., 2010
2009
DataMover: A Lightweight, Extensible Data Movement Framework for Grid Environments.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2009
Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach.
Proceedings of the IEEE International Conference on Web Services, 2009
Wrap Scientific Applications as WSRF Grid Services Using gRAVI.
Proceedings of the IEEE International Conference on Web Services, 2009
GridFTP GUI: An Easy and Efficient Way to Transfer Data in Grid.
Proceedings of the Networks for Grid Applications, 2009
2008
Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research.
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J. Am. Medical Informatics Assoc., 2008
Combining the Power of Taverna and caGrid: Scientific Workflows that Enable Web-Scale Collaboration.
IEEE Internet Comput., 2008
e-Science, caGrid, and Translational Biomedical Research.
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Computer, 2008
Orchestrating caGrid Services in Taverna.
Proceedings of the 2008 IEEE International Conference on Web Services (ICWS 2008), 2008
Building Scientific Workflow with Taverna and BPEL: A Comparative Study in caGrid.
Proceedings of the Service-Oriented Computing - ICSOC 2008 Workshops, 2008
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research.
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Proceedings of the Global Healthgrid: e-Science Meets Biomedical Informatics, 2008
Build Grid Enabled Scientific Workflows Using gRAVI and Taverna.
Proceedings of the Fourth International Conference on e-Science, 2008
2007
caGrid 1.0: A Grid Enterprise Architecture for Cancer Research.
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Proceedings of the AMIA 2007, 2007
2006
Streamlining Grid Operations: Definition and Deployment of a Portal-based User Registration Service.
J. Grid Comput., 2006
2004
An Overview of Grid File Transfer Patterns and Their Implementation in the Java CoG Kit.
Neural Parallel Sci. Comput., 2004
2002
Reliable File Transfer in Grid Environments.
Proceedings of the 27th Annual IEEE Conference on Local Computer Networks (LCN 2002), 2002