2022
Incorporating regulatory interactions into gene-set analyses for GWAS data: A controlled analysis with the MAGMA tool.
PLoS Comput. Biol., 2022

The DOMINO web-server for active module identification analysis.
Bioinform., 2022

2021
Long reads capture simultaneous enhancer-promoter methylation status for cell-type deconvolution.
Bioinform., 2021

2011
SPIKE: a database of highly curated human signaling pathways.
Nucleic Acids Res., 2011

2008
Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs.
PLoS Comput. Biol., 2008

SPIKE - a database, visualization and analysis tool of cellular signaling pathways.
BMC Bioinform., 2008

2005
<i>EXPANDER </i>- an integrative program suite for microarray data analysis.
BMC Bioinform., 2005