Distributing Simplex-Shaped Nested for-Loops to Identify Carcinogenic Gene Combinations.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023
Scaling Out a Combinatorial Algorithm for Discovering Carcinogenic Gene Combinations to Thousands of GPUs.
Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021
Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations.
PLoS Comput. Biol., 2019
CAGm: a repository of germline microsatellite variations in the 1000 genomes project.
Nucleic Acids Res., 2019
Multiscale Approximation with Graphical Processing Units for Multiplicative Speedup in Molecular Dynamics.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
<i>H</i>++ 3.0: automating p<i>K</i> prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations.
Nucleic Acids Res., 2012
An <i>N</i> log <i>N</i> approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions.
J. Comput. Chem., 2010
Analysis of Basic Clustering Algorithms for Numerical Estimation of Statistical Averages in Biomolecules.
J. Comput. Biol., 2008