PIRSitePredict for protein functional site prediction using position-specific rules.
Database J. Biol. Databases Curation, 2019
iPTMnet: an integrated resource for protein post-translational modification network discovery.
Nucleic Acids Res., 2018
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
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Nucleic Acids Res., 2017
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.
BMC Syst. Biol., 2013
Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013
Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees.
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Database J. Biol. Databases Curation, 2012
The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
Database J. Biol. Databases Curation, 2012