Finding Your Match: Techniques for Improving Sequence Alignment in DNA and RNA.
PhD thesis, 2006
COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching.
Proceedings of the Computational Science, 2006
SEPA: Approximate Non-subjective Empirical <i>p</i>-Value Estimation for Nucleotide Sequence Alignment.
Proceedings of the Computational Science, 2006
Aligning sequences with non-Affine Gap penalty: Plains Algorithm, a Practical Implementation, and its biological Applications in Comparative genomics.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005