Exploring Geometric Representational Alignment through Ollivier-Ricci Curvature and Ricci Flow.
CoRR, January, 2025
Fair Distributed Machine Learning with Imbalanced Data as a Stackelberg Evolutionary Game.
CoRR, 2024
Embedding Safety into RL: A New Take on Trust Region Methods.
CoRR, 2024
Revealing the learning process in reinforcement learning agents through attention-oriented metrics.
CoRR, 2024
Open Problem: Active Representation Learning.
CoRR, 2024
linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser.
PLoS Comput. Biol., 2021
Quality control for more reliable integration of deep learning-based image segmentation into medical workflows.
CoRR, 2021
A comparative study of semi- and self-supervised semantic segmentation of biomedical microscopy data.
CoRR, 2020
On the Ontological Foundations of Cellular Development.
Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020), 2020
On the Formal Representation and Annotation of Cellular Genealogies.
Proceedings of the Knowledge Engineering and Knowledge Management, 2020
Convolutional neural network stacking for medical image segmentation in CT scans.
CoRR, 2019
Ontology patterns for the representation of quality changes of cells in time.
J. Biomed. Semant., 2019
A pattern-based approach to a cell tracking ontology.
Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 23rd International Conference KES-2019, 2019
Foundations of the Cell Tracking Ontology.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019
Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology.
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NeuroImage, 2018
Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics.
Proceedings of the Machine Learning in Medical Imaging - 9th International Workshop, 2018
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection.
Int. J. Comput. Vis., 2017
Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.
Bioinform., 2015
The benchmark data SET CeTReS.B-MI for in vitro mitosis detection.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014
Panta Rhei: analysing the patterns of cellular organisation from time-lapse microscopy data.
PhD thesis, 2013
Beyond genealogies: Mutual information of causal paths to analyse single cell tracking data.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking.
Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013
Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions.
Bioinform., 2012
FluidTracks - Combining Nonlinear Image Registration and Active Contours for Cell Tracking.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012
Spatio-temporal Analysis of Unstained Cells In-vitro.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009
Segmentation of Axonal Fibres in Tissue Slices.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008
Image Registration of Differently Stained Histological Sections.
Proceedings of the International Conference on Image Processing, 2006
Registration of Histologic Colour Images of Different Staining.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006