2025
Large Language Models Meet Graph Neural Networks for Text-Numeric Graph Reasoning.
CoRR, January, 2025

2024
Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer.
CoRR, 2024

Rethinking the Power of Graph Canonization in Graph Representation Learning with Stability.
Proceedings of the Twelfth International Conference on Learning Representations, 2024

2023
Universal Normalization Enhanced Graph Representation Learning for Gene Network Prediction.
CoRR, 2023

2020
A comparison of genetic imputation methods using Long Life Family Study genotypes and sequence data with the 1000 Genome reference panel.
Int. J. Bioinform. Res. Appl., 2020

2018
VarExp: estimating variance explained by genome-wide GxE summary statistics.
Bioinform., 2018

2015
Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.
Bioinform., 2015

2010
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.
Bioinform., 2010

2008
Gathering the Gold Dust: Methods for Assessing the Aggregate Impact of Small Effect Genes in Genomic Scans.
Proceedings of the Biocomputing 2008, 2008

2002
Tree-Based Models for Fiting Stratified Linear Regression Models.
J. Classif., 2002

1995
Genetic epidemiology, parallel algorithms, and workstation networks.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995