2015
Regulators Associated with Clinical Outcomes Revealed by DNA Methylation Data in Breast Cancer.
PLoS Comput. Biol., 2015

Unsupervised Feature Construction and Knowledge Extraction from Genome-Wide Assays of Breast Cancer with Denoising Autoencoders.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data.
Nucleic Acids Res., 2014

2013
Transcription Factor Binding Profiles Reveal Cyclic Expression of Human Protein-coding Genes and Non-coding RNAs.
PLoS Comput. Biol., 2013

Using a Lexical Analysis of Student's Self-Explanation to Predict Course Performance.
Proceedings of the 6th International Conference on Educational Data Mining, 2013