2023
Multifunctionality in a Connectome-Based Reservoir Computer.
Proceedings of the IEEE International Conference on Systems, Man, and Cybernetics, 2023
Using Connectome Features to Constrain Echo State Networks.
Proceedings of the International Joint Conference on Neural Networks, 2023
2022
Imposing Connectome-Derived Topology on an Echo State Network.
Proceedings of the International Joint Conference on Neural Networks, 2022
2021
Is Human Walking a Network Medicine Problem? An Analysis Using Symbolic Regression Models with Genetic Programming.
Comput. Methods Programs Biomed., 2021
2020
A Fully-Connected Neural Network Derived from an Electron Microscopy Map of Olfactory Neurons in Drosophila Melanogaster for Odor Classification.
Proceedings of the 2020 IEEE International Conference on Systems, Man, and Cybernetics, 2020
2019
Novelty search for deep reinforcement learning policy network weights by action sequence edit metric distance.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019
Generating Nonlinear Models of Functional Connectivity from Functional Magnetic Resonance Imaging Data with Genetic Programming.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019
User and Task Identification of Smartwatch Data with an Ensemble of Nonlinear Symbolic Models.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019
2018
From Helmut Jürgensen's Former Students: The Game of Informatics Research.
J. Autom. Lang. Comb., 2018
On the generalizability of linear and non-linear region of interest-based multivariate regression models for fMRI data.
Proceedings of the 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2018
Analysis of symbolic models of biometrie data and their use for action and user identification.
Proceedings of the 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2018
2017
Searching for nonlinear relationships in fMRI data with symbolic regression.
Proceedings of the Genetic and Evolutionary Computation Conference, 2017
An algebraic generalization for graph and tensor-based neural networks.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017
Modelling intracranial pressure with noninvasive physiological measures.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017
2016
Halting the hallmarks: a cellular automaton model of early cancer growth inhibition.
Nat. Comput., 2016
Finding Nonlinear Relationships in fMRI Time Series with Symbolic Regression.
Proceedings of the Genetic and Evolutionary Computation Conference, 2016
2014
An Invitation to the Study of Brain Networks, with Some Statistical Analysis of Thresholding Techniques.
Proceedings of the Discrete and Topological Models in Molecular Biology, 2014
Gene co-citation networks associated with worker sterility in honey bees.
BMC Syst. Biol., 2014
Simulating Cancer Growth Using Cellular Automata to Detect Combination Drug Targets.
Proceedings of the Unconventional Computation and Natural Computation, 2014
2013
HD-CNV: hotspot detector for copy number variants.
Bioinform., 2013
2012
Computational Nature of Gene Assembly in Ciliates.
Proceedings of the Handbook of Natural Computing, 2012
Theor. Comput. Sci., 2012
One-reversal counter machines and multihead automata: Revisited.
Theor. Comput. Sci., 2012
Algorithmic decomposition of shuffle on words.
Theor. Comput. Sci., 2012
2011
Theoretical and computational properties of transpositions.
Nat. Comput., 2011
Orthogonal Shuffle on Trajectories.
Int. J. Found. Comput. Sci., 2011
2010
A relation by palindromic subwords.
Nat. Comput., 2010
Modelling programmed frameshifting with frameshift machines.
Nat. Comput., 2010
Orthogonal Concatenation: Language Equations and State Complexity.
J. Univers. Comput. Sci., 2010
2009
On the uniqueness of shuffle on words and finite languages.
Theor. Comput. Sci., 2009
Constructures: supporting human ingenuity in software.
Digit. Creativity, 2009
On the Shuffle Automaton Size for Words
Proceedings of the Proceedings Eleventh International Workshop on Descriptional Complexity of Formal Systems, 2009
Template-Guided Recombination: From Theory to Laboratory.
Proceedings of the Algorithmic Bioprocesses, 2009
2008
The Bag Automaton: A Model of Nondeterministic Storage.
J. Autom. Lang. Comb., 2008
Computation by Annotation: Modelling Epigenetic Regulation.
Int. J. Found. Comput. Sci., 2008
A Useful Bounded Resource Functional Language.
Proceedings of the SOFSEM 2008: Theory and Practice of Computer Science, 2008
No Going Back: An Interactive Visualization Application for Trailblazing on the Web.
Proceedings of the 12th International Conference on Information Visualisation, 2008
State Complexity of Orthogonal Catenation.
Proceedings of the 10th International Workshop on Descriptional Complexity of Formal Systems, 2008
On the Processing Power of Protozoa.
Proceedings of the Logic and Theory of Algorithms, 2008
2007
On codes defined by bio-operations.
Theor. Comput. Sci., 2007
Regulated RNA rewriting: Modelling RNA editing with guided insertion.
Theor. Comput. Sci., 2007
Intra-Molecular Template-Guided Recombination.
Int. J. Found. Comput. Sci., 2007
Dynamic ADTs: a "don't ask, don't tell" policy for data abstraction.
Proceedings of the International Lisp Conference, 2007
2006
Useful Templates and Iterated Template-Guided DNA Recombination in Ciliates.
Theory Comput. Syst., 2006
Iterated TGR Languages: Membership Problem and Effective Closure Properties.
Proceedings of the Computing and Combinatorics, 12th Annual International Conference, 2006
Voronoi diagrams, vectors and the visually impaired.
Proceedings of the Extended Abstracts Proceedings of the 2006 Conference on Human Factors in Computing Systems, 2006
2005
Template-guided DNA recombination.
Theor. Comput. Sci., 2005
Formal modelling of viral gene compression.
Int. J. Found. Comput. Sci., 2005
On Computational Properties of Template-Guided DNA Recombination.
Proceedings of the DNA Computing, 11th International Workshop on DNA Computing, 2005
2004
Families of languages defined by ciliate bio-operations.
Theor. Comput. Sci., 2004
Viral Gene Compression: Complexity and Verification.
Proceedings of the Implementation and Application of Automata, 2004
2003
Closure and decidability properties of some language classes with respect to ciliate bio-operations.
Theor. Comput. Sci., 2003
The LD and DLAD Bio-Operations on Formal Languages.
J. Autom. Lang. Comb., 2003
Bag Automata and Stochastic Retrieval of Biomolecules in Solution.
Proceedings of the Implementation and Application of Automata, 2003
2002
Some Properties of Ciliate Bio-operations.
Proceedings of the Developments in Language Theory, 6th International Conference, 2002
1999
Circular Contextual Insertions/Deletions with Applications to Biomolecular Computation.
Proceedings of the Sixth International Symposium on String Processing and Information Retrieval and Fifth International Workshop on Groupware, 1999
Proceedings of the Foundations of Software Technology and Theoretical Computer Science, 1999