2024
BNClassifier: Classifying Boolean Models by Dynamic Properties.
Proceedings of the Computational Methods in Systems Biology, 2024
Symbolic Model Checking of Hybrid CTL on Coloured Kripke Structures.
Proceedings of the Automated Technology for Verification and Analysis, 2024
2023
Boolean network sketches: a unifying framework for logical model inference.
Bioinform., April, 2023
Rule-based modelling of biological systems using regulated rewriting.
Biosyst., March, 2023
Temporary and permanent control of partially specified Boolean networks.
Biosyst., January, 2023
Phenotype Control of Partially Specified Boolean Networks.
Proceedings of the Computational Methods in Systems Biology, 2023
2022
AEON.py: Python library for attractor analysis in asynchronous Boolean networks.
Bioinform., October, 2022
BDD-Based Algorithm for SCC Decomposition of Edge-Coloured Graphs.
Log. Methods Comput. Sci., 2022
Robust Control of Partially Specified Boolean Networks.
CoRR, 2022
Biochemical Space Language in Relation to Multiset Rewriting Systems.
CoRR, 2022
Exploring attractor bifurcations in Boolean networks.
BMC Bioinform., 2022
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems.
Proceedings of the Computational Methods in Systems Biology, 2022
2021
Regulated Multiset Rewriting Systems.
CoRR, 2021
Symbolic Coloured SCC Decomposition.
Proceedings of the Tools and Algorithms for the Construction and Analysis of Systems, 2021
Aeon 2021: Bifurcation Decision Trees in Boolean Networks.
Proceedings of the Computational Methods in Systems Biology, 2021
Computing Bottom SCCs Symbolically Using Transition Guided Reduction.
Proceedings of the Computer Aided Verification - 33rd International Conference, 2021
2020
Parallel parameter synthesis algorithm for hybrid CTL.
Sci. Comput. Program., 2020
Digital Bifurcation Analysis of Internet Congestion Control Protocols.
Int. J. Bifurc. Chaos, 2020
Parallel One-Step Control of Parametrised Boolean Networks.
CoRR, 2020
Executable Biochemical Space for Specification and Analysis of Biochemical Systems.
CoRR, 2020
Executable Biochemical Space for Specification and Analysis of Biochemical Systems.
Proceedings of SASB 2018, the Ninth International Workshop on Static Analysis and Systems Biology, Freiburg, Germany, 2020
Parameter Synthesis and Robustness Analysis of Rule-Based Models.
Proceedings of the NASA Formal Methods - 12th International Symposium, 2020
eBCSgen: A Software Tool for Biochemical Space Language.
Proceedings of the Computational Methods in Systems Biology, 2020
Parallel Parameter Synthesis for Multi-affine Hybrid Systems from Hybrid CTL Specifications.
Proceedings of the Computational Methods in Systems Biology, 2020
AEON: Attractor Bifurcation Analysis of Parametrised Boolean Networks.
Proceedings of the Computer Aided Verification - 32nd International Conference, 2020
2019
Model Checking Approach to the Analysis of Biological Systems.
Proceedings of the Automated Reasoning for Systems Biology and Medicine, 2019
Digital Bifurcation Analysis of TCP Dynamics.
Proceedings of the Tools and Algorithms for the Construction and Analysis of Systems, 2019
Accelerating Parameter Synthesis Using Semi-algebraic Constraints.
Proceedings of the Integrated Formal Methods - 15th International Conference, 2019
Formal Analysis of Qualitative Long-Term Behaviour in Parametrised Boolean Networks.
Proceedings of the Formal Methods and Software Engineering, 2019
Facetal abstraction for non-linear dynamical systems based on δ-decidable SMT.
Proceedings of the 22nd ACM International Conference on Hybrid Systems: Computation and Control, 2019
Barbaric Robustness Monitoring Revisited for STL* in Parasim.
Proceedings of the Computational Methods in Systems Biology, 2019
2017
Precise parameter synthesis for stochastic biochemical systems.
Acta Informatica, 2017
Detecting Attractors in Biological Models with Uncertain Parameters.
Proceedings of the Computational Methods in Systems Biology, 2017
Pithya: A Parallel Tool for Parameter Synthesis of Piecewise Multi-affine Dynamical Systems.
Proceedings of the Computer Aided Verification - 29th International Conference, 2017
2016
Model checking C++ programs with exceptions.
Sci. Comput. Program., 2016
Analysing sanity of requirements for avionics systems.
Formal Aspects Comput., 2016
PRISM-PSY: Precise GPU-Accelerated Parameter Synthesis for Stochastic Systems.
Proceedings of the Tools and Algorithms for the Construction and Analysis of Systems, 2016
Toward Modelling and Analysis of Transient and Sustained Behaviour of Signalling Pathways.
Proceedings of the Hybrid Systems Biology - 5th International Workshop, 2016
A Model Checking Approach to Discrete Bifurcation Analysis.
Proceedings of the FM 2016: Formal Methods, 2016
High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study.
Proceedings of the Computational Methods in Systems Biology, 2016
Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-affine Systems.
Proceedings of the Automated Technology for Verification and Analysis, 2016
2015
Formal Biochemical Space with Semantics in Kappa and BNGL.
Proceedings of the 6th International Workshop on Static Analysis and Systems Biology, 2015
Analysing Sanity of Requirements for Avionics Systems (Preliminary Version).
CoRR, 2015
High-Performance Discrete Bifurcation Analysis for Piecewise-Affine Dynamical Systems.
Proceedings of the Hybrid Systems Biology - Fourth International Workshop, 2015
Parameter Synthesis by Parallel Coloured CTL Model Checking.
Proceedings of the Computational Methods in Systems Biology, 2015
Adaptive Aggregation of Markov Chains: Quantitative Analysis of Chemical Reaction Networks.
Proceedings of the Computer Aided Verification - 27th International Conference, 2015
2014
STL<sup>⁎</sup>: Extending signal temporal logic with signal-value freezing operator.
Inf. Comput., 2014
Compact Representation of Photosynthesis Dynamics by Rule-based Models.
Proceedings of the 5th International Workshop on Static Analysis and Systems Biology, 2014
Model Checking C++ with Exceptions.
Electron. Commun. Eur. Assoc. Softw. Sci. Technol., 2014
Compact Representation of Photosynthesis Dynamics by Rule-based Models (Full Version).
CoRR, 2014
2013
Robustness Analysis for Value-Freezing Signal Temporal Logic.
Proceedings of the Proceedings Second International Workshop on Hybrid Systems and Biology, 2013
On Robustness Analysis of Stochastic Biochemical Systems by Probabilistic Model Checking.
CoRR, 2013
Model Checking of Biological Systems.
Proceedings of the Formal Methods for Dynamical Systems, 2013
Improved State Space Reductions for LTL Model Checking of C and C++ Programs.
Proceedings of the NASA Formal Methods, 2013
Exploring Parameter Space of Stochastic Biochemical Systems Using Quantitative Model Checking.
Proceedings of the Computer Aided Verification - 25th International Conference, 2013
DiVinE 3.0 - An Explicit-State Model Checker for Multithreaded C & C++ Programs.
Proceedings of the Computer Aided Verification - 25th International Conference, 2013
Qualitative modelling and analysis of Photosystem II.
Proceedings of the International Workshop on Biological Processes & Petri Nets, 2013
LTL Model Checking of Parallel Programs with Under-Approximated TSO Memory Model.
Proceedings of the 13th International Conference on Application of Concurrency to System Design, 2013
2012
On Approximative Reachability Analysis of Biochemical Dynamical Systems.
Trans. Comp. Sys. Biology, 2012
On Parameter Synthesis by Parallel Model Checking.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
On-the-fly parallel model checking algorithm that is optimal for verification of weak LTL properties.
Sci. Comput. Program., 2012
Designing fast LTL model checking algorithms for many-core GPUs.
J. Parallel Distributed Comput., 2012
Using Strategy Improvement to Stay Alive.
Int. J. Found. Comput. Sci., 2012
Timed Modelling of Gene Networks with Arbitrarily Precise Expression Discretization.
Proceedings of the Third International Workshop on Interactions Between Computer Science and Biology, 2012
On Expressing and Monitoring Oscillatory Dynamics
Proceedings of the Proceedings First International Workshop on Hybrid Systems and Biology, 2012
Executing Model Checking Counterexamples in Simulink.
Proceedings of the Sixth International Symposium on Theoretical Aspects of Software Engineering, 2012
Checking Sanity of Software Requirements.
Proceedings of the Software Engineering and Formal Methods - 10th International Conference, 2012
Towards LTL Model Checking of Unmodified Thread-Based C & C++ Programs.
Proceedings of the NASA Formal Methods, 2012
Tool Chain to Support Automated Formal Verification of Avionics Simulink Designs.
Proceedings of the Formal Methods for Industrial Critical Systems, 2012
2011
Flash memory efficient LTL model checking.
Sci. Comput. Program., 2011
Partial order reduction for state/event LTL with application to component-interaction automata.
Sci. Comput. Program., 2011
Faster algorithms for mean-payoff games.
Formal Methods Syst. Des., 2011
Computing Optimal Cycle Mean in Parallel on CUDA
Proceedings of the Proceedings 10th International Workshop on Parallel and Distributed Methods in verifiCation, 2011
Platform Dependent Verification: On Engineering Verification Tools for 21st Century
Proceedings of the Proceedings 10th International Workshop on Parallel and Distributed Methods in verifiCation, 2011
Reachability in Biochemical Dynamical Systems by Quantitative Discrete Approximation (extended abstract)
Proceedings of the Proceedings Third International Workshop on Computational Models for Cell Processes, 2011
Reachability in Biochemical Dynamical Systems by Quantitative Discrete Approximation
CoRR, 2011
E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes.
Biosyst., 2011
Computing Strongly Connected Components in Parallel on CUDA.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011
2010
Scalable shared memory LTL model checking.
Int. J. Softw. Tools Technol. Transf., 2010
High-performance analysis of biological systems dynamics with the DiVinE model checker.
Briefings Bioinform., 2010
Parallel Partial Order Reduction with Topological Sort Proviso.
Proceedings of the 8th IEEE International Conference on Software Engineering and Formal Methods, 2010
Employing Multiple CUDA Devices to Accelerate LTL Model Checking.
Proceedings of the 16th IEEE International Conference on Parallel and Distributed Systems, 2010
2009
On algorithmic analysis of transcriptional regulation by LTL model checking.
Theor. Comput. Sci., 2009
DiVinE-CUDA - A Tool for GPU Accelerated LTL Model Checking
Proceedings of the Proceedings 8th International Workshop on Parallel and Distributed Methods in verifiCation, 2009
BioDiVinE: A Framework for Parallel Analysis of Biological Models
Proceedings of the Proceedings Second International Workshop on Computational Models for Cell Processes, 2009
Faster Algorithm for Mean-Payoff Games.
Proceedings of the Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2009
Cluster-Based I/O-Efficient LTL Model Checking.
Proceedings of the ASE 2009, 2009
Partial Order Reduction for State/Event LTL.
Proceedings of the Integrated Formal Methods, 7th International Conference, 2009
CUDA Accelerated LTL Model Checking.
Proceedings of the 15th IEEE International Conference on Parallel and Distributed Systems, 2009
A Time-Optimal On-the-Fly Parallel Algorithm for Model Checking of Weak LTL Properties.
Proceedings of the Formal Methods and Software Engineering, 2009
09491 Abstracts Collection - Graph Search Engineering.
Proceedings of the Graph Search Engineering, 29.11. - 04.12.2009, 2009
2008
Revisiting Resistance Speeds Up I/O-Efficient LTL Model Checking.
Proceedings of the Tools and Algorithms for the Construction and Analysis of Systems, 2008
ProbDiVinE-MC: Multi-core LTL Model Checker for Probabilistic Systems.
Proceedings of the Fifth International Conference on the Quantitative Evaluaiton of Systems (QEST 2008), 2008
Squeeze All the Power Out of Your Hardware to Verify Your Software!.
Proceedings of the Leveraging Applications of Formal Methods, 2008
Can Flash Memory Help in Model Checking?
Proceedings of the Formal Methods for Industrial Critical Systems, 2008
Local Quantitative LTL Model Checking.
Proceedings of the Formal Methods for Industrial Critical Systems, 2008
Efficient Large-Scale Model Checking.
Proceedings of the Distributed Verification and Grid Computing, 10.08. - 14.08.2008, 2008
08332 Executive Summary - Distributed Verification and Grid Computing.
Proceedings of the Distributed Verification and Grid Computing, 10.08. - 14.08.2008, 2008
08332 Abstracts Collection - Distributed Verification and Grid Computing.
Proceedings of the Distributed Verification and Grid Computing, 10.08. - 14.08.2008, 2008
DiVinE Multi-Core - A Parallel LTL Model-Checker.
Proceedings of the Automated Technology for Verification and Analysis, 2008
2007
Parallel Model Checking Large-Scale Genetic Regulatory Networks with DiVinE.
Proceedings of the First Workshop "From Biology To Concurrency and back", 2007
Tutorial: Parallel Model Checking.
Proceedings of the Model Checking Software, 2007
Scalable Multi-core LTL Model-Checking.
Proceedings of the Model Checking Software, 2007
Model-Checking Large Finite-State Systems and Beyond.
Proceedings of the SOFSEM 2007: Theory and Practice of Computer Science, 2007
ProbDiVinE: A Parallel Qualitative LTL Model Checker.
Proceedings of the Fourth International Conference on the Quantitative Evaluaiton of Systems (QEST 2007), 2007
Parallel Model Checking and the FMICS-jETI Platform.
Proceedings of the 12th International Conference on Engineering of Complex Computer Systems (ICECCS 2007), 2007
Component-Interaction Automata Approach (CoIn).
Proceedings of the Common Component Modeling Example: Comparing Software Component Models [result from the Dagstuhl research seminar for CoCoME, 2007
I/O Efficient Accepting Cycle Detection.
Proceedings of the Computer Aided Verification, 19th International Conference, 2007
2006
Component-interaction automata as a verification-oriented component-based system specification.
ACM SIGSOFT Softw. Eng. Notes, 2006
Formal Methods Syst. Des., 2006
On Combining Partial Order Reduction with Fairness Assumptions.
Proceedings of the Formal Methods: Applications and Technology, 2006
Distributed Verification: Exploring the Power of Raw Computing Power.
Proceedings of the Formal Methods: Applications and Technology, 2006
DiVinE - A Tool for Distributed Verification.
Proceedings of the Computer Aided Verification, 18th International Conference, 2006
2005
Assumption-based distribution of CTL model checking.
Int. J. Softw. Tools Technol. Transf., 2005
Int. J. Softw. Tools Technol. Transf., 2005
Proceedings of the First International Workshop on Methods and Tools for Coordinating Concurrent, 2005
How to Order Vertices for Distributed LTL Model-Checking Based on Accepting Predecessors.
Proceedings of the 4th International Workshop on Parallel and Distributed Methods in Verification, 2005
Enhancing random walk state space exploration.
Proceedings of the 10th international workshop on Formal methods for industrial critical systems, 2005
Cluster-Based LTL Model Checking of Large Systems.
Proceedings of the Formal Methods for Components and Objects, 4th International Symposium, 2005
2004
Proceedings of the 3rd International Workshop on Parallel and Distributed Methods in Verification, 2004
Distributed Partial Order Reduction of State Spaces.
Proceedings of the 3rd International Workshop on Parallel and Distributed Methods in Verification, 2004
From Distributed Memory Cycle Detection to Parallel LTL Model Checking.
Proceedings of the Ninth International Workshop on Formal Methods for Industrial Critical Systems, 2004
Accepting Predecessors Are Better than Back Edges in Distributed LTL Model-Checking.
Proceedings of the Formal Methods in Computer-Aided Design, 5th International Conference, 2004
2003
Using Assumptions to Distribute Alternation Free Mu-Calculus Model Checking.
Proceedings of the 2nd International Workshop on Parallel and Distributed Model Checking, 2003
Distribution of Explicit-State LTL Model-Checking.
Proceedings of the Eighth International Workshop on Formal Methods for Industrial Critical Systems, 2003
Distributed Negative Cycle Detection Algorithms.
Proceedings of the Parallel Computing: Software Technology, 2003
Parallel Breadth-First Search LTL Model-Checking.
Proceedings of the 18th IEEE International Conference on Automated Software Engineering (ASE 2003), 2003
2002
Coordination by Means of Synchronous and Asynchronous Communication in Concurrent Constraint Programming.
Proceedings of the Foundations of Coordination Languages and Software Architectures, 2002
Proceedings of the Parallel and Distributed Model Checking, 2002
Using Assumptions to Distribute CTL Model Checking.
Proceedings of the Parallel and Distributed Model Checking, 2002
Modelling Multi-Agent Systems as Synchronous Concurrent Constraint Processes.
Comput. Artif. Intell., 2002
2001
Distributed LTL Model-Checking in SPIN.
Proceedings of the Model Checking Software, 2001
Multi-agent Systems as Concurrent Constraint Processes.
Proceedings of the SOFSEM 2001: Theory and Practice of Informatics, 28th Conference on Current Trends in Theory and Practice of Informatics Piestany, Slovak Republic, November 24, 2001
How to Employ Reverse Search in Distributed Single Source Shortest Paths.
Proceedings of the SOFSEM 2001: Theory and Practice of Informatics, 28th Conference on Current Trends in Theory and Practice of Informatics Piestany, Slovak Republic, November 24, 2001
Randomization Helps in LTL Model Checking.
Proceedings of the Process Algebra and Probabilistic Methods, 2001
Distributed LTL Model Checking Based on Negative Cycle Detection.
Proceedings of the FST TCS 2001: Foundations of Software Technology and Theoretical Computer Science, 2001
1996
A Process Algebra for Synchronous Concurrent Constraint Programming.
Proceedings of the Algebraic and Logic Programming, 5th International Conference, 1996
1995
Proceedings of the Logic Programming, 1995
1992
Modal Logics in Timed Process Algebras.
Proceedings of the NAPAW 92, 1992