2024
Bifurcation analysis of an algal blooms dynamical model in trophic interaction.
J. Appl. Math. Comput., August, 2024
Polynomial-time derivation of optimal k-tree topology from Markov networks.
CoRR, 2024
α-HMM: A Graphical Model for RNA Folding.
CoRR, 2024
Modeling the impact of directional movement on mosquito population suppress.
Appl. Math. Lett., 2024
A Study on the Implementation and Impact of Basic Electrical Skills Training: University-Wide General Education Course.
Proceedings of the 13th IEEE International Conference on Engineering Education, 2024
Associating Endpoint Accuracy and Similarity of Muscle Synergies.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024
2023
An improved wavelet threshold denoising approach for surface electromyography signal.
EURASIP J. Adv. Signal Process., December, 2023
Global dynamics of a vector-borne disease model with direct transmission and differential susceptibility.
J. Appl. Math. Comput., February, 2023
Classification and Analysis of Human Body Movement Characteristics Associated with Acrophobia Induced by Virtual Reality Scenes of Heights.
Sensors, 2023
2022
Efficient Summary Reuse for Software Regression Verification.
IEEE Trans. Software Eng., 2022
SPNet: Siamese-Prototype Network for Few-Shot Remote Sensing Image Scene Classification.
IEEE Trans. Geosci. Remote. Sens., 2022
Gated Recurrent Unit Network for Psychological Stress Classification Using Electrocardiograms from Wearable Devices.
Sensors, 2022
2021
Human MicroRNA Target Prediction via Multi-Hypotheses Learning.
J. Comput. Biol., 2021
Development of A Low-Inertia 5-DOF Hybrid Manipulator for Moxibustion.
Proceedings of the 20th International Conference on Advanced Robotics, 2021
2020
Modeling and analyzing cholera transmission dynamics with vaccination age.
J. Frankl. Inst., 2020
On Graph Learning with Neural Networks.
Proceedings of the Machine Learning, Optimization, and Data Science, 2020
2019
Non-local Recoloring Algorithm for Color Vision Deficiencies with Naturalness and Detail Preserving.
Proceedings of the Digital TV and Wireless Multimedia Communication, 2019
A Multi-hypothesis Learning Algorithm for Human and Mouse miRNA Target Prediction.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2019
2018
Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex.
J. Bioinform. Comput. Biol., 2018
When Regression Verification Meets CEGAR.
CoRR, 2018
Efficient Learning of Optimal Markov Network Topology with k-Tree Modeling.
CoRR, 2018
2016
A New Graph Theoretic Approach for Protein Threading.
Fundam. Informaticae, 2016
Genome-wide identification and evolutionary analysis of long non-coding RNAs in cereals.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
2015
Accurate prediction of RNA nucleotide interactions with backbone <i>k</i>-tree model.
Bioinform., 2015
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.
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BioData Min., 2015
2014
Dynamics of Mosquitoes Populations with Different Strategies for Releasing Sterile Mosquitoes.
SIAM J. Appl. Math., 2014
Analysis of an extended HIV/AIDS epidemic model with treatment.
Appl. Math. Comput., 2014
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling.
Proceedings of the Language and Automata Theory and Applications, 2014
Ab initio Prediction of RNA Nucleotide Interactions with Backbone <i>k</i>-Tree Model.
Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014
2013
Polynomial kernels collapse the W-hierarchy.
CoRR, 2013
Patterns of Chromatin-Modifications Discriminate Different Genomic Features in <i>Arabidopsis</i>.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
Protein Closed Loop Prediction from Contact Probabilities.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
2012
Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.
BMC Bioinform., 2012
TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.
Bioinform., 2012
2011
Analyzing Modular RNA Structure reveals Low Global Structural Entropy in microRNA Sequence.
J. Bioinform. Comput. Biol., 2011
TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes.
Int. J. Bioinform. Res. Appl., 2011
Simultaneous Prediction of RNA Secondary Structure and Helix Coaxial Stacking.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
RNApasta: a tool for analysis of RNA structural alignments.
Int. J. Bioinform. Res. Appl., 2010
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results.
Algorithmica, 2010
2009
RNATOPS-W: a web server for RNA structure searches of genomes.
Bioinform., 2009
2008
Parameterized Complexity and Biopolymer Sequence Comparison.
Comput. J., 2008
Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Bioinform., 2008
2007
The Complexity of Polynomial-Time Approximation.
Theory Comput. Syst., 2007
Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition.
Proceedings of the Biocomputing 2007, 2007
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007
Operon Prediction in Microbial Genomes Using Decision Tree Approach.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007
2006
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Int. J. Bioinform. Res. Appl., 2006
Rapid <i>ab initio</i> RNA Folding Including Pseudoknots Via Graph Tree Decomposition.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006
Phylogenetic Network Inferences Through Efficient Haplotyping.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition.
Proceedings of the Biocomputing 2006, 2006
Peptide sequence tag-based blind identification of post-translational modifications with point process model.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
Learning the Parameters of Stochastic Grammar Models for RNA Structures with Pseudoknots.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006
2005
Profiling and Searching for RNA Pseudoknot Structures in Genomes.
Trans. Comp. Sys. Biology, 2005
J. Comput. Sci. Technol., 2005
RNA Structural Homology Search with a Succinct Stochastic Grammar Model.
J. Comput. Sci. Technol., 2005
BEST: Binding-site Estimation Suite of Tools.
Bioinform., 2005
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment.
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005
2003
On the existence of subexponential parameterized algorithms.
J. Comput. Syst. Sci., 2003
Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003
2002
The inapproximability of non-NP-hard optimization problems.
Theor. Comput. Sci., 2002
2001
Subexponential Parameterized Algorithms Collapse the W-Hierarchy.
Proceedings of the Automata, Languages and Programming, 28th International Colloquium, 2001
2000
Evolutionary computation techniques for multiple sequence alignment.
Proceedings of the 2000 Congress on Evolutionary Computation, 2000
1998
Circuit Bottom Fan-In and Computational Power.
SIAM J. Comput., 1998
1997
On the Amount of Nondeterminism and the Power of Verifying.
SIAM J. Comput., 1997
On Fixed-Parameter Tractability and Approximability of NP Optimization Problems.
J. Comput. Syst. Sci., 1997
Advice Classes of Parameterized Tractability.
Ann. Pure Appl. Log., 1997
On the parameterized complexity of short computation and factorization.
Arch. Math. Log., 1997
A Grammar Characterization of Logarithmic-Space Computation.
Proceedings of the New Trends in Formal Languages, 1997
1996
The Computational Complexity of Linear PCGSs.
Comput. Artif. Intell., 1996
1995
On Input Read-Modes of Alternating Turing Machines.
Theor. Comput. Sci., 1995
On the Structure of Parameterized Problems in NP.
Inf. Comput., 1995
The Computational Complexity of PCGS with Regular Components.
Proceedings of the Developments in Language Theory II, 1995
On log-Time Alternating Turing Machines of Alternation Depth k (Extended Abstract).
Proceedings of the Computing and Combinatorics, First Annual International Conference, 1995
1994
On the Structure of Parameterized Problems in NP (Extended Abstract).
Proceedings of the STACS 94, 1994
1993
On the Amount of Nondeterminism and the Power of Verifying (Extended Abstract).
Proceedings of the Mathematical Foundations of Computer Science 1993, 1993
On Fixed-Parameter Tractability and Approximability of <i>NP</i>-Hard Optimization Problems.
Proceedings of the Second Israel Symposium on Theory of Computing Systems, 1993