Blood microbial analyses reveal long-term effects of SARS-CoV-2 infection on patients who recovered from COVID-19.
Comput. Biol. Medicine, January, 2024
SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers.
Genom. Proteom. Bioinform., 2024
Attention mechanism models for precision medicine.
Briefings Bioinform., 2024
Microbiome characteristics description of COVID-19 patients based on bulk RNA-seq and scRNA-Seq data.
Comput. Biol. Medicine, October, 2023
iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network.
Briefings Bioinform., March, 2023
<i>microbioTA</i>: an atlas of the microbiome in multiple disease tissues of <i>Homo sapiens</i> and <i>Mus musculus</i>.
Nucleic Acids Res., January, 2023
gutMDisorder v2.0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions.
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Nucleic Acids Res., January, 2023
MGPLI: exploring multigranular representations for protein-ligand interaction prediction.
Bioinform., October, 2022
SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.
Nucleic Acids Res., 2022
gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites.
Nucleic Acids Res., 2022
ELECTRA-DTA: a new compound-protein binding affinity prediction model based on the contextualized sequence encoding.
J. Cheminformatics, 2022
A modified exchange algorithm for distributional robust optimization and applications in risk management.
Int. Trans. Oper. Res., 2022
A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19.
Briefings Bioinform., 2022
SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs.
Bioinform., 2021
Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches.
Briefings Bioinform., 2021
CNA2Subpathway: identification of dysregulated subpathway driven by copy number alterations in cancer.
Briefings Bioinform., 2021
Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2.
Briefings Bioinform., 2021
gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions.
Nucleic Acids Res., 2020
DeepLGP: a novel deep learning method for prioritizing lncRNA target genes.
Bioinform., 2020
psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression.
Bioinform., 2020
Identification of gene signature associated with type 2 diabetes mellitus by integrating mutation and expression data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
OntoSem: an Ontology Semantic Representation Methodology for Biomedical Domain.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse.
Nucleic Acids Res., 2019
Identifying Alzheimer's disease-related proteins by LRRGD.
BMC Bioinform., 2019
MetSigDis: a manually curated resource for the metabolic signatures of diseases.
Briefings Bioinform., 2019
Identifying diseases-related metabolites using random walk.
BMC Bioinform., 2018
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function.
Bioinform., 2018
A Novel Method for Identifying Alzheimer's Disease-related Proteins.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
A novel method to identify pre-microRNA in various species knowledge base on various species.
J. Biomed. Semant., 2017
DisSetSim: an online system for calculating similarity between disease sets.
J. Biomed. Semant., 2017
A novel method to identify pre-microRNA in various species knowledge base.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
InfDisSim: A novel method for measuring disease similarity based on information flow.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Alignment results of SOBOM for OAEI 2010.
Proceedings of the 5th International Workshop on Ontology Matching (OM-2010), 2010