Visualization of automatically combined disease maps and pathway diagrams for rare diseases.
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Frontiers Bioinform., May, 2023
A system-level analysis of patient disease trajectories based on clinical, phenotypic and molecular similarities.
Bioinform., 2021
The DisGeNET knowledge platform for disease genomics: 2019 update.
Nucleic Acids Res., 2020
Clinical-Based and Expert Selection of Terms Related to Depression for Twitter Streaming and Language Analysis.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020
Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets.
Bioinform., 2019
ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer.
Database J. Biol. Databases Curation, 2019
Supervised Learning Approaches to Detect Negation Cues in Spanish Reviews.
Proceedings of the Iberian Languages Evaluation Forum co-located with 35th Conference of the Spanish Society for Natural Language Processing, 2019
comoRbidity: an R package for the systematic analysis of disease comorbidities.
Bioinform., 2018
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.
Bioinform., 2018
IBI at TREC 2018: Precision Medicine Track.
Proceedings of the Twenty-Seventh Text REtrieval Conference, 2018
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data.
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Proceedings of the 14th IEEE International Conference on e-Science, 2018
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants.
Nucleic Acids Res., 2017
psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes.
Bioinform., 2017
Text mining and expert curation to develop a database on psychiatric diseases and their genes.
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Database J. Biol. Databases Curation, 2017
IBI-UPF at BARR-2017: Learning to Identify Abbreviations in Biomedical Literature System description.
Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), 2017
Reliable Granular References to Changing Linked Data.
Proceedings of the Semantic Web - ISWC 2017, 2017
Publishing DisGeNET as nanopublications.
Semantic Web, 2016
CDH1/E-cadherin and solid tumors. An updated gene-disease association analysis using bioinformatics tools.
Comput. Biol. Chem., 2016
DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases.
Bioinform., 2016
A crowdsourcing workflow for extracting chemical-induced disease relations from free text.
Database J. Biol. Databases Curation, 2016
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.
Database J. Biol. Databases Curation, 2016
Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016
On Reasoning with RDF Statements about Statements using Singleton Property Triples.
CoRR, 2015
Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research.
BMC Bioinform., 2015
PsyGeNET: a knowledge platform on psychiatric disorders and their genes.
Bioinform., 2015
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.
Database J. Biol. Databases Curation, 2015
Exposing Provenance Metadata Using Different RDF Models.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015
Reuse of EHRs to Support Clinical Research in a Hospital of Reference.
Proceedings of the Digital Healthcare Empowering Europeans, 2015
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.
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J. Biomed. Semant., 2014
DisGeNET RDF: A Gene-Disease Association Linked Open Data Resource.
Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013
The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships.
J. Biomed. Informatics, 2012
DisGeNET: from MySQL to Nanopublication, Modelling Gene-Disease Associations for the Semantic Web.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers.
BMC Bioinform., 2011
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks.
Bioinform., 2010
Digging for knowledge with information extraction: a case study on human gene-disease associations.
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010
From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways.
BMC Bioinform., 2009
Identification of Sequence Variants of Genes from Biomedical Literature.
Proceedings of the Information Retrieval in Biomedicine, 2009
OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature.
BMC Bioinform., 2008
Identifying gene-Specific Variations in Biomedical Text.
J. Bioinform. Comput. Biol., 2007
OSIRIS: a tool for retrieving literature about sequence variants.
Bioinform., 2006