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2023
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
[DOI]
Elisabeth Coudert
,
Sebastien Gehant
,
Edouard De Castro
,
Monica Pozzato
,
Delphine Baratin
,
Teresa Batista Neto
,
Christian J. A. Sigrist
,
Nicole Redaschi
,
Alan J. Bridge
,
Lucila Aimo
,
Ghislaine Argoud-Puy
,
Andrea H. Auchincloss
,
Kristian B. Axelsen
,
Parit Bansal
,
Marie-Claude Blatter
,
Jerven T. Bolleman
,
Emmanuel Boutet
,
Lionel Breuza
,
Blanca Cabrera Gil
,
Cristina Casals-Casas
,
Kamal Chikh Echioukh
,
Béatrice A. Cuche
,
Anne Estreicher
,
Maria Livia Famiglietti
,
Marc Feuermann
,
Elisabeth Gasteiger
,
Pascale Gaudet
,
Vivienne Baillie Gerritsen
,
Arnaud Gos
,
Nadine Gruaz-Gumowski
,
Chantal Hulo
,
Nevila Hyka-Nouspikel
,
Florence Jungo
,
Arnaud Kerhornou
,
Philippe Le Mercier
,
Damien Lieberherr
,
Patrick Masson
,
Anne Morgat
,
Venkatesh Muthukrishnan
,
Salvo Paesano
,
Ivo Pedruzzi
,
Sandrine Pilbout
,
Lucille Pourcel
,
Sylvain Poux
,
Manuela Pruess
,
Catherine Rivoire
,
Karin Sonesson
,
Shyamala Sundaram
,
Alex Bateman
,
Maria Jesus Martin
,
Sandra E. Orchard
,
Michele Magrane
,
Shadab Ahmad
,
Emanuele Alpi
,
Emily H. Bowler-Barnett
,
Ramona Britto
,
Hema Bye-A-Jee
,
Austra Cukura
,
Paul Denny
,
Tunca Dogan
,
Thankgod Ebenezer
,
Jun Fan
,
Penelope Garmiri
,
Leonardo Jose da Costa Gonzales
,
Emma Hatton-Ellis
,
Abdulrahman Hussein
,
Alexandr Ignatchenko
,
Giuseppe Insana
,
Rizwan Ishtiaq
,
Vishal Joshi
,
Dushyanth Jyothi
,
Swaathi Kandasamy
,
Antonia Lock
,
Aurelien Luciani
,
Marija Lugaric
,
Jie Luo
,
Yvonne Lussi
,
Alistair MacDougall
,
Fábio Madeira
,
Mahdi Mahmoudy
,
Alok Mishra
,
Katie Moulang
,
Andrew Nightingale
,
Sangya Pundir
,
Guoying Qi
,
Shriya Raj
,
Pedro Raposo
,
Daniel Rice
,
Rabie Saidi
,
Rafael Santos
,
Elena Speretta
,
James D. Stephenson
,
Prabhat Totoo
,
Edward Turner
,
Nidhi Tyagi
,
Preethi Vasudev
,
Kate Warner
,
Xavier Watkins
,
Rossana Zaru
,
Hermann Zellner
,
Cathy H. Wu
,
Cecilia N. Arighi
,
Leslie Arminski
,
Chuming Chen
,
Yongxing Chen
,
Hongzhan Huang
,
Kati Laiho
,
Peter B. McGarvey
,
Darren A. Natale
,
Karen Ross
,
C. R. Vinayaka
,
Qinghua Wang
,
Yuqi Wang
Bioinform., January, 2023
2021
The Gene Ontology resource: enriching a GOld mine.
[DOI]
Seth Carbon
,
Eric Douglass
,
Benjamin M. Good
,
Deepak R. Unni
,
Nomi L. Harris
,
Christopher J. Mungall
,
Siddartha Basu
,
Rex L. Chisholm
,
Robert J. Dodson
,
Eric Hartline
,
Petra Fey
,
Paul D. Thomas
,
Laurent-Philippe Albou
,
Dustin Ebert
,
Michael J. Kesling
,
Huaiyu Mi
,
Anushya Muruganujan
,
Xiaosong Huang
,
Tremayne Mushayahama
,
Sandra A. LaBonte
,
Deborah A. Siegele
,
Giulia Antonazzo
,
Helen Attrill
,
Nick H. Brown
,
Phani V. Garapati
,
Steven J. Marygold
,
Vitor Trovisco
,
Gilberto dos Santos
,
Kathleen Falls
,
Christopher J. Tabone
,
Pinglei Zhou
,
Joshua L. Goodman
,
Victor B. Strelets
,
Jim Thurmond
,
Penelope Garmiri
,
Rizwan Ishtiaq
,
Milagros Rodríguez-López
,
Marcio Luis Acencio
,
Martin Kuiper
,
Astrid Lægreid
,
Colin Logie
,
Ruth C. Lovering
,
Barbara Kramarz
,
Shirin C. C. Saverimuttu
,
Sandra M. Pinheiro
,
Heather Gunn
,
Renzhi Su
,
Katherine E. Thurlow
,
Marcus C. Chibucos
,
Michelle G. Giglio
,
Suvarna Nadendla
,
James B. Munro
,
Rebecca C. Jackson
,
Margaret J. Duesbury
,
Noemi del-Toro
,
Birgit H. M. Meldal
,
Kalpana Paneerselvam
,
Livia Perfetto
,
Pablo Porras
,
Sandra E. Orchard
,
Anjali Shrivastava
,
Hsin-Yu Chang
,
Robert D. Finn
,
Alex L. Mitchell
,
Neil D. Rawlings
,
Lorna J. Richardson
,
Amaia Sangrador-Vegas
,
Judith A. Blake
,
Karen R. Christie
,
Mary E. Dolan
,
Harold J. Drabkin
,
David P. Hill
,
Li Ni
,
Dmitry M. Sitnikov
,
Midori A. Harris
,
Stephen G. Oliver
,
Kim Rutherford
,
Valerie Wood
,
Jaqueline Hayles
,
Jürg Bähler
,
Elizabeth R. Bolton
,
Jeffrey DePons
,
Melinda R. Dwinell
,
G. Thomas Hayman
,
Mary L. Kaldunski
,
Anne E. Kwitek
,
Stanley J. F. Laulederkind
,
Cody Plasterer
,
Marek Tutaj
,
Mahima Vedi
,
Shur-Jen Wang
,
Peter D'Eustachio
,
Lisa Matthews
,
James P. Balhoff
,
Suzi A. Aleksander
,
Michael J. Alexander
,
J. Michael Cherry
,
Stacia R. Engel
,
Felix Gondwe
,
Kalpana Karra
,
Stuart R. Miyasato
,
Robert S. Nash
,
Matt Simison
,
Marek S. Skrzypek
,
Shuai Weng
,
Edith D. Wong
,
Marc Feuermann
,
Pascale Gaudet
,
Anne Morgat
,
Erica Bakker
,
Tanya Z. Berardini
,
Leonore Reiser
,
Shabari Subramaniam
,
Eva Huala
,
Cecilia N. Arighi
,
Andrea H. Auchincloss
,
Kristian B. Axelsen
,
Ghislaine Argoud-Puy
,
Alex Bateman
,
Marie-Claude Blatter
,
Emmanuel Boutet
,
Emily Bowler
,
Lionel Breuza
,
Alan J. Bridge
,
Ramona Britto
,
Hema Bye-A-Jee
,
Cristina Casals-Casas
,
Elisabeth Coudert
,
Paul Denny
,
Anne Estreicher
,
Maria Livia Famiglietti
,
George E. Georghiou
,
Arnaud Gos
,
Nadine Gruaz-Gumowski
,
Emma Hatton-Ellis
,
Chantal Hulo
,
Alexandr Ignatchenko
,
Florence Jungo
,
Kati Laiho
,
Philippe Le Mercier
,
Damien Lieberherr
,
Antonia Lock
,
Yvonne Lussi
,
Alistair MacDougall
,
Michele Magrane
,
Maria Jesus Martin
,
Patrick Masson
,
Darren A. Natale
,
Nevila Hyka-Nouspikel
,
Ivo Pedruzzi
,
Lucille Pourcel
,
Sylvain Poux
,
Sangya Pundir
,
Catherine Rivoire
,
Elena Speretta
,
Shyamala Sundaram
,
Nidhi Tyagi
,
Kate Warner
,
Rossana Zaru
,
Cathy H. Wu
,
Alexander D. Diehl
,
Juancarlos Chan
,
Christian A. Grove
,
Raymond Y. N. Lee
,
Hans-Michael Müller
,
Daniela Raciti
,
Kimberly Van Auken
,
Paul W. Sternberg
,
Matthew Berriman
,
Michael Paulini
,
Kevin L. Howe
,
Sibyl Gao
,
Adam Wright
,
Lincoln Stein
,
Douglas G. Howe
,
Sabrina Toro
,
Monte Westerfield
,
Pankaj Jaiswal
,
Laurel Cooper
,
Justin Elser
Nucleic Acids Res., 2021
UniProt: the universal protein knowledgebase in 2021.
[DOI]
Alex Bateman
,
Maria Jesus Martin
,
Sandra E. Orchard
,
Michele Magrane
,
Rahat Agivetova
,
Shadab Ahmad
,
Emanuele Alpi
,
Emily H. Bowler-Barnett
,
Ramona Britto
,
Borisas Bursteinas
,
Hema Bye-A-Jee
,
Ray Coetzee
,
Austra Cukura
,
Alan W. Sousa da Silva
,
Paul Denny
,
Tunca Dogan
,
Thankgod Ebenezer
,
Jun Fan
,
Leyla Jael García Castro
,
Penelope Garmiri
,
George E. Georghiou
,
Leonardo Gonzales
,
Emma Hatton-Ellis
,
Abdulrahman Hussein
,
Alexandr Ignatchenko
,
Giuseppe Insana
,
Rizwan Ishtiaq
,
Petteri Jokinen
,
Vishal Joshi
,
Dushyanth Jyothi
,
Antonia Lock
,
Rodrigo Lopez
,
Aurelien Luciani
,
Jie Luo
,
Yvonne Lussi
,
Alistair MacDougall
,
Fábio Madeira
,
Mahdi Mahmoudy
,
Manuela Menchi
,
Alok Mishra
,
Katie Moulang
,
Andrew Nightingale
,
Carla Susana Oliveira
,
Sangya Pundir
,
Guoying Qi
,
Shriya Raj
,
Daniel Rice
,
Milagros Rodríguez-López
,
Rabie Saidi
,
Joseph Sampson
,
Tony Sawford
,
Elena Speretta
,
Edward Turner
,
Nidhi Tyagi
,
Preethi Vasudev
,
Vladimir Volynkin
,
Kate Warner
,
Xavier Watkins
,
Rossana Zaru
,
Hermann Zellner
,
Alan J. Bridge
,
Sylvain Poux
,
Nicole Redaschi
,
Lucila Aimo
,
Ghislaine Argoud-Puy
,
Andrea H. Auchincloss
,
Kristian B. Axelsen
,
Parit Bansal
,
Delphine Baratin
,
Marie-Claude Blatter
,
Jerven T. Bolleman
,
Emmanuel Boutet
,
Lionel Breuza
,
Cristina Casals-Casas
,
Edouard De Castro
,
Kamal Chikh Echioukh
,
Elisabeth Coudert
,
Béatrice A. Cuche
,
Mikael Doche
,
Dolnide Dornevil
,
Anne Estreicher
,
Maria Livia Famiglietti
,
Marc Feuermann
,
Elisabeth Gasteiger
,
Sebastien Gehant
,
Vivienne Baillie Gerritsen
,
Arnaud Gos
,
Nadine Gruaz-Gumowski
,
Ursula Hinz
,
Chantal Hulo
,
Nevila Hyka-Nouspikel
,
Florence Jungo
,
Guillaume Keller
,
Arnaud Kerhornou
,
Vicente Lara
,
Philippe Le Mercier
,
Damien Lieberherr
,
Thierry Lombardot
,
Xavier Martin
,
Patrick Masson
,
Anne Morgat
,
Teresa Batista Neto
,
Salvo Paesano
,
Ivo Pedruzzi
,
Sandrine Pilbout
,
Lucille Pourcel
,
Monica Pozzato
,
Manuela Pruess
,
Catherine Rivoire
,
Christian J. A. Sigrist
,
Karin Sonesson
,
Andre Stutz
,
Shyamala Sundaram
,
Michael Tognolli
,
Laure Verbregue
,
Cathy H. Wu
,
Cecilia N. Arighi
,
Leslie Arminski
,
Chuming Chen
,
Yongxing Chen
,
John S. Garavelli
,
Hongzhan Huang
,
Kati Laiho
,
Peter B. McGarvey
,
Darren A. Natale
,
Karen Ross
,
C. R. Vinayaka
,
Qinghua Wang
,
Yuqi Wang
,
Lai-Su Yeh
,
Jian Zhang
,
Patrick Ruch
,
Douglas Teodoro
Nucleic Acids Res., 2021
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
[DOI]
Alistair MacDougall
,
Vladimir Volynkin
,
Rabie Saidi
,
Diego Poggioli
,
Hermann Zellner
,
Emma Hatton-Ellis
,
Vishal Joshi
,
Claire O'Donovan
,
Sandra E. Orchard
,
Andrea H. Auchincloss
,
Delphine Baratin
,
Jerven T. Bolleman
,
Elisabeth Coudert
,
Edouard De Castro
,
Chantal Hulo
,
Patrick Masson
,
Ivo Pedruzzi
,
Catherine Rivoire
,
Cecilia N. Arighi
,
Qinghua Wang
,
Chuming Chen
,
Hongzhan Huang
,
John Garavelli
,
C. R. Vinayaka
,
Lai-Su Yeh
,
Darren A. Natale
,
Kati Laiho
,
Maria Jesus Martin
,
Alexandre Renaux
,
Klemens Pichler
Bioinform., 2021
2014
Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.
[DOI]
Sylvain Poux
,
Michele Magrane
,
Cecilia N. Arighi
,
Alan J. Bridge
,
Claire O'Donovan
,
Kati Laiho
Database J. Biol. Databases Curation, 2014
2012
The UniProt-GO Annotation database in 2011.
[DOI]
Emily C. Dimmer
,
Rachael P. Huntley
,
Yasmin Alam-Faruque
,
Tony Sawford
,
Claire O'Donovan
,
Maria Jesus Martin
,
Benoit Bely
,
Paul Browne
,
Wei Mun Chan
,
Ruth Y. Eberhardt
,
Michael Gardner
,
Kati Laiho
,
Duncan Legge
,
Michele Magrane
,
Klemens Pichler
,
Diego Poggioli
,
Harminder Sehra
,
Andrea H. Auchincloss
,
Kristian B. Axelsen
,
Marie-Claude Blatter
,
Emmanuel Boutet
,
Silvia Braconi-Quintaje
,
Lionel Breuza
,
Alan J. Bridge
,
Elisabeth Coudert
,
Anne Estreicher
,
Maria Livia Famiglietti
,
Serenella Ferro-Rojas
,
Marc Feuermann
,
Arnaud Gos
,
Nadine Gruaz-Gumowski
,
Ursula Hinz
,
Chantal Hulo
,
Janet James
,
Silvia Jimenez
,
Florence Jungo
,
Guillaume Keller
,
Phillippe Lemercier
,
Damien Lieberherr
,
Patrick Masson
,
Madelaine Moinat
,
Ivo Pedruzzi
,
Sylvain Poux
,
Catherine Rivoire
,
Bernd Roechert
,
Michel Schneider
,
Andre Stutz
,
Shyamala Sundaram
,
Michael Tognolli
,
Lydie Bougueleret
,
Ghislaine Argoud-Puy
,
Isabelle Cusin
,
Paula Duek Roggli
,
Ioannis Xenarios
,
Rolf Apweiler
Nucleic Acids Res., 2012