2024
Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT.
Patterns, January, 2024

Exploring the reversal curse and other deductive logical reasoning in BERT and GPT-based large language models.
Patterns, 2024

Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders.
npj Digit. Medicine, 2024

2023
Classification of integers based on residue classes via modern deep learning algorithms.
Patterns, December, 2023

Multimodal Machine Learning Combining Facial Images and Clinical Texts Improves Diagnosis of Rare Genetic Diseases.
CoRR, 2023

Not All Large Language Models (LLMs) Succumb to the "Reversal Curse": A Comparative Study of Deductive Logical Reasoning in BERT and GPT Models.
CoRR, 2023

On the Prime Number Divisibility by Deep Learning.
CoRR, 2023

2022
Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV): case studies on COVID-19 and Human Phenotype Ontology.
BMC Medical Informatics Decis. Mak., 2022

2020
Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
PLoS Comput. Biol., 2020

Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder.
BMC Medical Informatics Decis. Mak., 2020

Genome-wide detection of short tandem repeat expansions by long-read sequencing.
BMC Bioinform., 2020

2019
Doc2Hpo: a web application for efficient and accurate HPO concept curation.
Nucleic Acids Res., 2019

2009
Multiple testing in genome-wide association studies via hidden Markov models.
Bioinform., 2009

ATOM: a powerful gene-based association test by combining optimally weighted markers.
Bioinform., 2009