UEP: an open-source and fast classifier for predicting the impact of mutations in protein-protein complexes.
Bioinform., 2021
pyDockEneRes: per-residue decomposition of protein-protein docking energy.
Bioinform., 2020
SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation.
Bioinform., 2019
LightDock: a new multi-scale approach to protein-protein docking.
Bioinform., 2018
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
Bioinform., 2017
pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
Nucleic Acids Res., 2015
CCharPPI web server: computational characterization of protein-protein interactions from structure.
Bioinform., 2015
Comment on 'protein-protein binding affinity prediction from amino acid sequence'.
Bioinform., 2015
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization.
PLoS Comput. Biol., 2013
The scoring of poses in protein-protein docking: current capabilities and future directions.
BMC Bioinform., 2013
SwarmDock: a server for flexible protein-protein docking.
Bioinform., 2013
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
Bioinform., 2013
Cell-Dock: high-performance protein-protein docking.
Bioinform., 2012
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models.
Bioinform., 2012
Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein-Protein Docking.
J. Chem. Inf. Model., 2011
Prediction of protein-binding areas by small-world residue networks and application to docking.
BMC Bioinform., 2011
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.
BMC Bioinform., 2010
Structural Prediction of Protein-RNA Interaction by Computational Docking with Propensity-Based Statistical Potentials.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Drug Design on the Cell BE.
Proceedings of the Scientific Computing with Multicore and Accelerators., 2010
Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments.
PLoS Comput. Biol., 2009
Predicting protein - protein interfaces as clusters of Optimal Docking Area points.
Int. J. Data Min. Bioinform., 2009
FRODOCK: a new approach for fast rotational protein-protein docking.
Bioinform., 2009
Identification of hot-spot residues in protein-protein interactions by computational docking.
BMC Bioinform., 2008
In silico docking of urokinase plasminogen activator and integrins.
BMC Bioinform., 2008
Structural assembly of two-domain proteins by rigid-body docking.
BMC Bioinform., 2008
Predicting Protein-Protein Interface using Desolvation Energy Similarity Matching.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction Sites.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002