Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.

Comparative analysis of regulatory information and circuits across distant species Open.

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.

Tiling array data analysis: a multiscale approach using wavelets.

ACT: aggregation and correlation toolbox for analyses of genome tracks.

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.

Modeling ChIP Sequencing In Silico with Applications.

Assessing the need for sequence-based normalization in tiling microarray experiments.

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.