2025
Reusable specimen-level inference in computational pathology.
CoRR, January, 2025
National COVID Cohort Collaborative data enhancements: a path for expanding common data models.
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J. Am. Medical Informatics Assoc., 2025
2024
High-Performance Spatial Data Analytics: Systematic R&D for Scale-Out and Scale-Up Solutions from the Past to Now.
Proc. VLDB Endow., August, 2024
Attention De-sparsification Matters: Inducing diversity in digital pathology representation learning.
Medical Image Anal., 2024
Gen-SIS: Generative Self-augmentation Improves Self-supervised Learning.
CoRR, 2024
ZoomLDM: Latent Diffusion Model for multi-scale image generation.
CoRR, 2024
RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency.
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CoRR, 2024
PathLDM: Text conditioned Latent Diffusion Model for Histopathology.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Semi-supervised Contrastive VAE for Disentanglement of Digital Pathology Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024
Decoding the Visual Attention of Pathologists to Reveal Their Level of Expertise.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024
∞-Brush: Controllable Large Image Synthesis with Diffusion Models in Infinite Dimensions.
Proceedings of the Computer Vision - ECCV 2024, 2024
Uncertainty Estimation for Tumor Prediction with Unlabeled Data.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024
SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024
Learned Representation-Guided Diffusion Models for Large-Image Generation.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024
Pan-Cancer Tumor Infiltrating Lymphocyte Detection based on Federated Learning.
Proceedings of the IEEE International Conference on Big Data, 2024
New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024
2023
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
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J. Am. Medical Informatics Assoc., November, 2023
ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification.
Comput. Methods Programs Biomed., September, 2023
Effective and efficient active learning for deep learning-based tissue image analysis.
Bioinform., April, 2023
Open and reusable deep learning for pathology with WSInfer and QuPath.
CoRR, 2023
Halcyon - A Pathology Imaging and Feature analysis and Management System.
CoRR, 2023
Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images.
Proceedings of the Medical Imaging with Deep Learning, 2023
Few Shot Hematopoietic Cell Classification.
Proceedings of the Medical Imaging with Deep Learning, 2023
SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023
Prompt-MIL: Boosting Multi-instance Learning Schemes via Task-Specific Prompt Tuning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023
Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology.
Proceedings of the Information Processing in Medical Imaging, 2023
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023
2022
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning.
J. Parallel Distributed Comput., 2022
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).
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J. Am. Medical Informatics Assoc., 2022
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.
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J. Am. Medical Informatics Assoc., 2022
ImageBox3: No-Server Tile Serving to Traverse Whole Slide Images on the Web.
CoRR, 2022
AI and Pathology: Steering Treatment and Predicting Outcomes.
CoRR, 2022
Evaluating histopathology transfer learning with ChampKit.
CoRR, 2022
A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment.
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CoRR, 2022
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes.
CoRR, 2022
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes.
Comput. Methods Programs Biomed., 2022
Gigapixel Whole-Slide Images Classification Using Locally Supervised Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022
Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer.
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Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022
Visual Attention Analysis Of Pathologists Examining Whole Slide Images Of Prostate Cancer.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Learning Topological Interactions for Multi-Class Medical Image Segmentation.
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Proceedings of the Computer Vision - ECCV 2022, 2022
2021
Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning.
J. Biomed. Informatics, 2021
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
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J. Am. Medical Informatics Assoc., 2021
Identifying risk of opioid use disorder for patients taking opioid medications with deep learning.
J. Am. Medical Informatics Assoc., 2021
Building robust pathology image analyses with uncertainty quantification.
Comput. Methods Programs Biomed., 2021
Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Integration of Experiment, Big Data, and Modeling and Simulation, 2021
Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network.
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Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021
Multi-Class Cell Detection Using Spatial Context Representation.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021
A Joint Spatial and Magnification Based Attention Framework for Large Scale Histopathology Classification.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2021
Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use.
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Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
AI in Medical Imaging Informatics: Current Challenges and Future Directions.
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IEEE J. Biomed. Health Informatics, 2020
Representing Whole Slide Cancer Image Features with Hilbert Curves.
CoRR, 2020
Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types.
CoRR, 2020
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse.
Concurr. Comput. Pract. Exp., 2020
Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images.
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Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020
Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer.
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Proceedings of the Computer Vision - ECCV 2020 Workshops, 2020
SMOOTH-GAN: Towards Sharp and Smooth Synthetic EHR Data Generation.
Proceedings of the Artificial Intelligence in Medicine, 2020
2019
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images.
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Pattern Recognit., 2019
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows.
J. Digit. Imaging, 2019
Run-time Parameter Sensitivity Analysis Optimizations.
CoRR, 2019
Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types.
CoRR, 2019
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer.
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CoRR, 2019
Label Super Resolution with Inter-Instance Loss.
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CoRR, 2019
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows.
Comput. Biol. Medicine, 2019
Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019
Label super-resolution networks.
Proceedings of the 7th International Conference on Learning Representations, 2019
Robust Histopathology Image Analysis: To Label or to Synthesize?
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2019
Delivering Scalable Deep Learning to Research with Bridges-AI.
Proceedings of the High Performance Computing - 6th Latin American Conference, 2019
From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer.
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Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2019
Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case.
Proceedings of the 8th Brazilian Conference on Intelligent Systems, 2019
Exascale Deep Learning to Accelerate Cancer Research.
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Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019
Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records.
Proceedings of the AMIA 2019, 2019
2018
Big data and extreme-scale computing.
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Int. J. High Perform. Comput. Appl., 2018
Disease phenotyping using deep learning: A diabetes case study.
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CoRR, 2018
Methods for Segmentation and Classification of Digital Microscopy Tissue Images.
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CoRR, 2018
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance.
CoRR, 2018
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurr. Comput. Pract. Exp., 2018
Social Media Based Analysis of Opioid Epidemic Using Reddit.
Proceedings of the AMIA 2018, 2018
Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation.
Proceedings of the AMIA 2018, 2018
2017
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis.
Int. J. High Perform. Comput. Appl., 2017
Unsupervised Histopathology Image Synthesis.
CoRR, 2017
Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images.
CoRR, 2017
Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images.
Proceedings of the 2017 IEEE Winter Conference on Applications of Computer Vision, 2017
Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.
Proceedings of the Medical Imaging 2017: Digital Pathology, 2017
Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017
SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017
Spatio-temporal Analysis for New York State SPARCS Data.
Proceedings of the Summit on Clinical Research Informatics, 2017
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems.
Proceedings of the 2017 IEEE International Conference on Cluster Computing, 2017
20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon.
Proceedings of the AMIA 2017, 2017
Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State.
Proceedings of the AMIA 2017, 2017
ConvNets with Smooth Adaptive Activation Functions for Regression.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017
2016
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets.
CoRR, 2016
Neural Networks with Smooth Adaptive Activation Functions for Regression.
CoRR, 2016
Hierarchical nucleus segmentation in digital pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016
Multi-scale learning based segmentation of glands in digital colonrectal pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016
Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification.
Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition, 2016
S2CR3UM: A Solution to the In Silico Relevance, Reliability & Reproducibility Conundrum.
Proceedings of the AMIA 2016, 2016
POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports.
Proceedings of the AMIA 2016, 2016
Safe "cloudification" of large images through picker APIs.
Proceedings of the AMIA 2016, 2016
2015
Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs.
CoRR, 2015
Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification.
CoRR, 2015
Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies.
BMC Bioinform., 2015
Maps of Human Disease: A Web-Based Framework for the Visualization of Human Disease Comorbidity and Clinical Profile Overlay.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015
SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies.
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015
Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM).
Proceedings of the 27th International Symposium on Computer Architecture and High Performance Computing, 2015
Integrative Informatics and Predictive Modeling Support for Population Health.
Proceedings of the AMIA 2015, 2015
OpenHealth Platform for Interactive Contextualization of Population Health Open Data.
Proceedings of the AMIA 2015, 2015
2014
Approximate similarity search for online multimedia services on distributed CPU-GPU platforms.
VLDB J., 2014
Region templates: Data representation and management for high-throughput image analysis.
Parallel Comput., 2014
Region Templates: Data Representation and Management for Large-Scale Image Analysis.
CoRR, 2014
Parallel content-based sub-image retrieval using hierarchical searching.
Bioinform., 2014
GlycoPattern: a web platform for glycan array mining.
Bioinform., 2014
Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems.
Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing, 2014
Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014
2013
Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.
Proc. VLDB Endow., 2013
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines.
Parallel Comput., 2013
The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data.
J. Biomed. Informatics, 2013
Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data.
J. Am. Medical Informatics Assoc., 2013
Semantically Interoperable XML Data.
Int. J. Semantic Comput., 2013
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures.
Int. J. High Perform. Comput. Appl., 2013
Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU.
CoRR, 2013
Scalable Locality-Sensitive Hashing for Similarity Search in High-Dimensional, Large-Scale Multimedia Datasets.
CoRR, 2013
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013
Demonstration of Hadoop-GIS: a spatial data warehousing system over MapReduce.
Proceedings of the 21st SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2013
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Clinical Phenotyping with the Analytic Information Warehouse.
Proceedings of the AMIA 2013, 2013
Temporal Abstraction-based Clinical Phenotyping with Eureka!
Proceedings of the AMIA 2013, 2013
2012
Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems.
Proc. VLDB Endow., 2012
Digital Pathology: Data-Intensive Frontier in Medical Imaging.
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Proc. IEEE, 2012
Integrated morphologic analysis for the identification and characterization of disease subtypes.
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J. Am. Medical Informatics Assoc., 2012
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms
CoRR, 2012
Efficient regression testing of ontology-driven systems.
Proceedings of the International Symposium on Software Testing and Analysis, 2012
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012
Towards building a high performance spatial query system for large scale medical imaging data.
Proceedings of the SIGSPATIAL 2012 International Conference on Advances in Geographic Information Systems (formerly known as GIS), 2012
ZPEG: A hybrid DPCM-DCT based approach for compression of Z-stack images.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012
Enabling ontology based semantic queries in biomedical database systems.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
Proceedings of the AMIA 2012, 2012
Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources.
Proceedings of the AMIA 2012, 2012
A Pipeline Supporting Efficient and Flexible Analytics Using Longitudinal and High-dimensional Extracts from Clinical Databases.
Proceedings of the AMIA 2012, 2012
Leveraging Derived Data Elements in Data Analytic Models for Understanding and Predicting Hospital Readmissions.
Proceedings of the AMIA 2012, 2012
2011
Run Time Parallelization.
Proceedings of the Encyclopedia of Parallel Computing, 2011
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
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IEEE Trans. Biomed. Eng., 2011
Optimizing latency and throughput of application workflows on clusters.
Parallel Comput., 2011
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.
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J. Am. Medical Informatics Assoc., 2011
A new steerable pressure force for parametric deformable models.
Proceedings of the Medical Imaging 2011: Image Processing, 2011
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Morphological signatures and genomic correlates in glioblastoma.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
An Integrative Approach for In Silico Glioma Research.
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IEEE Trans. Biomed. Eng., 2010
Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer Treatment Outcome Prediction: Preliminary Evaluation.
J. Digit. Imaging, 2010
Exploring the performance of massively multithreaded architectures.
Concurr. Comput. Pract. Exp., 2010
Parameterized specification, configuration and execution of data-intensive scientific workflows.
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Clust. Comput., 2010
High Performance Computing Techniques for Scaling Image Analysis Workflows.
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Proceedings of the Applied Parallel and Scientific Computing, 2010
An evaluation of feature sets and sampling techniques for de-identification of medical records.
Proceedings of the ACM International Health Informatics Symposium, 2010
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism.
Proceedings of the IEEE International Conference on Acoustics, 2010
HIV-K: an Integrative Knowledge Base for Semantic Integration of AIDS-related Malignancy Data and Treatment Outcomes.
Proceedings of the Healthgrid Applications and Core Technologies, 2010
Two-point correlation as a feature for histology images: Feature space structure and correlation updating.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2010
2009
Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading.
J. Signal Process. Syst., 2009
An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications.
IEEE Trans. Parallel Distributed Syst., 2009
Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development.
Pattern Recognit., 2009
Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation.
Pattern Recognit., 2009
Tensor classification of N-point correlation function features for histology tissue segmentation.
Medical Image Anal., 2009
VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid.
J. Digit. Imaging, 2009
A Knowledge-Anchored Integrative Image Search and Retrieval System.
J. Digit. Imaging, 2009
HPC and Grid Computing for Integrative Biomedical Research.
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Int. J. High Perform. Comput. Appl., 2009
Stroma classification for neuroblastoma on graphics processors.
Int. J. Data Min. Bioinform., 2009
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
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BMC Syst. Biol., 2009
Parallel materialization of large ABoxes.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009
A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Architectural implications for spatial object association algorithms.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009
An integrated framework for performance-based optimization of scientific workflows.
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Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, 2009
2008
Reconstruction of Cellular Biological Structures from Optical Microscopy Data.
IEEE Trans. Vis. Comput. Graph., 2008
Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Trans. Inf. Technol. Biomed., 2008
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets.
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J. Biomed. Informatics, 2008
Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research.
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J. Am. Medical Informatics Assoc., 2008
Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment.
J. Am. Medical Informatics Assoc., 2008
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments.
Int. J. Parallel Program., 2008
e-Science, caGrid, and Translational Biomedical Research.
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Computer, 2008
Analysis and Semantic Querying in Large Biomedical Image Datasets.
Computer, 2008
Using overlays for efficient data transfer over shared wide-area networks.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008
Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
Computerized microscopic image analysis of follicular lymphoma.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
Cancer treatment outcome prediction by assessing temporal change: application to cervical cancer.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
Pathological image segmentation for neuroblastoma using the GPU.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Translational research design templates, Grid computing, and HPC.
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Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
Designing and parameterizing a workflow for optimization: A case study in biomedical imaging.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows.
Proceedings of the 2008 International Conference on Parallel Processing, 2008
Texture classification using nonlinear color quantization: Application to histopathological image analysis.
Proceedings of the IEEE International Conference on Acoustics, 2008
Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP.
Proceedings of the 17th International Symposium on High-Performance Distributed Computing (HPDC-17 2008), 2008
Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs.
Proceedings of the High Speed and Large Scale Scientific Computing - Selected Papers from the High Performance Computing Workshop, Cetraro, Italy, June 30, 2008
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research.
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Proceedings of the Global Healthgrid: e-Science Meets Biomedical Informatics, 2008
2007
Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies.
IEEE Trans. Medical Imaging, 2007
Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments.
Parallel Comput., 2007
GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support.
J. Digit. Imaging, 2007
Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services.
J. Grid Comput., 2007
Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data.
Comput. Sci. Eng., 2007
Parallel four-dimensional Haralick texture analysis for disk-resident image datasets.
Concurr. Comput. Pract. Exp., 2007
Toward terabyte pattern mining: an architecture-conscious solution.
Proceedings of the 12th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2007
Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
Intelligent Optimization of Parallel and Distributed Applications.
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Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach.
Proceedings of the International Conference on Image Processing, 2007
Dynamic Data-Driven Systems Approach for Simulation Based Optimizations.
Proceedings of the Computational Science, 2007
Optimizing multiple queries on scientific datasets with partial replicas.
Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), 2007
Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters.
Proceedings of the Euro-Par 2007, 2007
Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters.
Proceedings of the Euro-Par 2007, 2007
Performance vs. accuracy trade-offs for large-scale image analysis applications.
Proceedings of the 2007 IEEE International Conference on Cluster Computing, 2007
Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma.
Proceedings of the 5th IEEE workshop on Challenges of large applications in distributed environments, 2007
An Efficient and Reliable Scientific Workflow System.
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Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007
Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007
The GPU on biomedical image processing for color and phenotype analysis.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
caGrid 1.0: A Grid Enterprise Architecture for Cancer Research.
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Proceedings of the AMIA 2007, 2007
The Cancer Biomedical Informatics Grid (caBIG<sup>™</sup>) Security Infrastructure.
Proceedings of the AMIA 2007, 2007
Computerized Pathological Image Analysis For Neuroblastoma Prognosis.
Proceedings of the AMIA 2007, 2007
2006
Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases.
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J. Am. Medical Informatics Assoc., 2006
Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis.
Int. J. High Perform. Comput. Appl., 2006
Models, methods and middleware for grid-enabled multiphysics oil reservoir management.
Eng. Comput., 2006
caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.
Bioinform., 2006
Imaging and visual analysis - Large image correction and warping in a cluster environment.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
Registration and 3D visualization of large microscopy images.
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Proceedings of the Medical Imaging 2006: Image Processing, 2006
Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006
A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2006
On the detection of intra-ventricular dyssynchrony in the left ventricle from routine cardiac MRI.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006
I/O conscious algorithm design and systems support for data analysis on emerging architectures.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006
Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006
An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006
On Creating Efficient Object-relational Views of Scientific Datasets.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006
Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository.
Proceedings of the Computational Science, 2006
Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O.
Proceedings of the 15th IEEE International Symposium on High Performance Distributed Computing, 2006
Service-Based Access to and Processing of Large Scientific Datasets.
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Proceedings of the High Performance Computing and Grids in Action, 2006
Image Analysis for Neuroblastoma Classification: Segmentation of Cell Nuclei.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
A New Deformable Model for Boundary Tracking in Cardiac MRI and Its Application to the Detection of Intra-Ventricular Dyssynchrony.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006
Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications.
Proceedings of the 2006 IEEE International Conference on Cluster Computing, 2006
Dorian: Grid Service Infrastructure for Identity Management and Federation.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006
Prototype Integration of Protein Electrophoresis Laboratory Results In an Information Warehouse to Improve Workflow and Data Analysis.
Proceedings of the AMIA 2006, 2006
2005
XML database support for distributed execution of data-intensive scientific workflows.
SIGMOD Rec., 2005
Application of Information Technology: A Grid-Based Image Archival and Analysis System.
J. Am. Medical Informatics Assoc., 2005
The GPU as an indirection engine for a fast information retrieval.
Int. J. Electron. Bus., 2005
Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies.
Future Gener. Comput. Syst., 2005
A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies.
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Concurr. Pract. Exp., 2005
Grid-based management of biomedical data using an XML-based distributed data management system.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005
Exploiting Parallelism on Irregular Applications Using the GPU.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005
Supporting Large Scale Medical and Scientific Datasets.
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Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005
A Services Oriented Framework for Next Generation Data Analysis Centers.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
Design of a next generation sampling service for large scale data analysis applications.
Proceedings of the 19th Annual International Conference on Supercomputing, 2005
Towards Dynamic Data-Driven Optimization of Oil Well Placement.
Proceedings of the Computational Science, 2005
Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services.
Proceedings of the Data Management in Grids, First VLDB Workshop, 2005
Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying.
Proceedings of the 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26, 2005
Servicing range queries on multidimensional datasets with partial replicas.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005
A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005
The GPU on irregular computing: performance issues and contributions.
Proceedings of the 9th International Conference on Computer-Aided Design and Computer Graphics, 2005
2004
Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments.
IEEE Trans. Parallel Distributed Syst., 2004
A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets.
Proceedings of the ACM/IEEE SC2004 Conference on High Performance Networking and Computing, 2004
Supporting SQL-3 Aggregations on Grid-Based Data Repositories.
Proceedings of the Languages and Compilers for High Performance Computing, 2004
Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies.
Proceedings of the Computational Science, 2004
Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004
An Approach for Automatic Data Virtualization.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004
Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data.
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Proceedings of the Grid Computing: The New Frontier of High Performance Computing [post-proceedings of the High Performance Computing Workshop, 2004
Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O.
Proceedings of the 5th International Workshop on Grid Computing (GRID 2004), 2004
An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
A distributed data management middleware for data-driven application systems.
Proceedings of the 2004 IEEE International Conference on Cluster Computing (CLUSTER 2004), 2004
Serving queries to multi-resolution datasets on disk-based storage clusters.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004
2003
IEEE Trans. Inf. Technol. Biomed., 2003
Interprocedural definition-use chains of dynamic pointer-linked data structures.
Sci. Program., 2003
Database Support for Data-Driven Scientific Applications in the Grid.
Parallel Process. Lett., 2003
Identifying parallelism in programs with cyclic graphs.
J. Parallel Distributed Comput., 2003
Optimizing Reduction Computations In a Distributed Environment.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003
A Component-based Implementation of Multiple Sequence Alignment.
Proceedings of the 2003 ACM Symposium on Applied Computing (SAC), 2003
Middleware Infrastructure for Large-Scale Data Management.
Proceedings of the IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2003, 2003
Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies.
Proceedings of the Languages and Compilers for Parallel Computing, 2003
Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries.
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003
Driving Scientific Applications by Data in Distributed Environments.
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Proceedings of the Computational Science - ICCS 2003, 2003
Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model.
Proceedings of the 12th International Symposium on High-Performance Distributed Computing (HPDC-12 2003), 2003
Impact of High Performance Sockets on Data Intensive Applications.
Proceedings of the 12th International Symposium on High-Performance Distributed Computing (HPDC-12 2003), 2003
Applying Database Support for Large Scale Data Driven Science in Distributed Environments.
Proceedings of the 4th International Workshop on Grid Computing (GRID 2003), 2003
A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003
Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003
Impact of CPOE Order Sets on Lab Orders.
Proceedings of the AMIA 2003, 2003
Information Warehouse as a Tool to Analyze Computerized Physician Order Entry Order Set Utilization: Opportunities for Improvement.
Proceedings of the AMIA 2003, 2003
Proteomic Pattern Analysis, a New Era of Screening Cancers.
Proceedings of the AMIA 2003, 2003
Order Sets Utilization in a Clinical Order Entry System.
Proceedings of the AMIA 2003, 2003
Pharmacokinetic Mapping of Breast Tumors: a New Statistical Analysis Technique for Dynamic magnetic resonance Imaging.
Proceedings of the AMIA 2003, 2003
2002
Data parallel language and compiler support for data intensive applications.
Parallel Comput., 2002
Processing large-scale multi-dimensional data in parallel and distributed environments.
Parallel Comput., 2002
Optimizing execution of component-based applications using group instances.
Future Gener. Comput. Syst., 2002
Executing multiple pipelined data analysis operations in the grid.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002
Active Proxy-G: optimizing the query execution process in the grid.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Compiler supported high-level abstractions for sparse disk-resident datasets.
Proceedings of the 16th international conference on Supercomputing, 2002
Low-Cost Non-Intrusive Debugging Strategies for Distributed Parallel Programs.
Proceedings of the 2002 IEEE International Conference on Cluster Computing (CLUSTER 2002), 2002
Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs.
Proceedings of the 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 2002
2001
Analysis of the Clustering Properties of the Hilbert Space-Filling Curve.
IEEE Trans. Knowl. Data Eng., 2001
Distributed processing of very large datasets with DataCutter.
Parallel Comput., 2001
Visualization of Large Data Sets with the Active Data Repository.
IEEE Computer Graphics and Applications, 2001
Efficient execution of multiple query workloads in data analysis applications.
Proceedings of the 2001 ACM/IEEE conference on Supercomputing, 2001
A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001
Performance Optimization for Data Intensive Grid Applications.
Proceedings of the 3rd Annual International Workshop on Active Middleware Services (AMS 2001), 2001
Runtime and Compiler Support for Irregular Computations.
Proceedings of the Compiler Optimizations for Scalable Parallel Systems Languages, 2001
Compiler and Runtime Analysis for Efficient Communication in Data Intensive Applications.
Proceedings of the 2001 International Conference on Parallel Architectures and Compilation Techniques (PACT 2001), 2001
2000
Efficient Performance Prediction for Large-Scale, Data-Intensive Applications.
Int. J. High Perform. Comput. Appl., 2000
Query Optimization in KESS - An Ontology-Based KBMS.
Proceedings of the XV Simpósio Brasileiro de Banco de Dados, 2000
DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems.
Proceedings of the Eighth NASA Goddard Space Flight Center Conference on Mass Storage Systems and Technologies in cooperation with Seventeenth IEEE Symposium on Mass Storage Systems, 2000
High Level Programming Methodologies for Data Intensive Computations.
Proceedings of the Languages, 2000
Compiling Data Intensive Applications with Spatial Coordinates.
Proceedings of the Languages and Compilers for Parallel Computing, 2000
Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets.
Proceedings of the 14th International Parallel & Distributed Processing Symposium (IPDPS'00), 2000
Compiling object-oriented data intensive applications.
Proceedings of the 14th international conference on Supercomputing, 2000
Evaluation of Active Disks for Decision Support Databases.
Proceedings of the Sixth International Symposium on High-Performance Computer Architecture, 2000
Design of a Framework for Data-Intensive Wide-Area Applications.
Proceedings of the 9th Heterogeneous Computing Workshop, 2000
1999
Object-Relational Queries into Multidimensional Databases with the Active Data Repository.
Parallel Process. Lett., 1999
Active Storage Hierarchy, Database Systems and Applications - Socratic Exegesis.
Proceedings of the VLDB'99, 1999
Querying Very Large Multi-dimensional Datasets in ADR.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1999
Towards a Knowledge Base Management System (KBMS): An Ontology-Aware Database Management System (DBMS).
Proceedings of the XIV Simpósio Brasileiro de Banco de Dados, 1999
Coupling Multiple Simulations via a High Performance Customizable Database System.
Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999
Database Methods for Efficient Manipulation of Very Large Datasets.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999
Infrastructure for Building Parallel Database Systems for Multi-Dimensional Data.
Proceedings of the 13th International Parallel Processing Symposium / 10th Symposium on Parallel and Distributed Processing (IPPS / SPDP '99), 1999
Performance impact of proxies in data intensive client-server applications.
Proceedings of the 13th international conference on Supercomputing, 1999
A High-Performance Database System for Managing Large Multi-resolution Medical Images.
Proceedings of the AMIA 1999, 1999
1998
Scalability Analysis of Declustering Methods for Multidimensional Range Queries.
IEEE Trans. Knowl. Data Eng., 1998
T2: A Customizable Parallel Database for Multi-Dimensional Data.
SIGMOD Rec., 1998
The Design and Evaluation of a High-Performance Earth Science Database.
Parallel Comput., 1998
Programming Tools and Environments.
Commun. ACM, 1998
A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines.
Proceedings of the Languages, 1998
Adapting to Bandwidth Variations in Wide-Area Data Combination.
Proceedings of the 18th International Conference on Distributed Computing Systems, 1998
Active Disks: Programming Model, Algorithms and Evaluation.
Proceedings of the ASPLOS-VIII Proceedings of the 8th International Conference on Architectural Support for Programming Languages and Operating Systems, 1998
A graphical tool for ad hoc query generation.
Proceedings of the AMIA 1998, 1998
Digital dynamic telepathology-the Virtual Microscope.
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Proceedings of the AMIA 1998, 1998
1997
Interprocedural Data Flow Based Optimizations for Distributed Memory Compilation.
Softw. Pract. Exp., 1997
Resource-aware metacomputing.
Concurr. Pract. Exp., 1997
Programming Irregular Applications: Runtime Support, Compilation and Tools.
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Adv. Comput., 1997
The Utility of Exploiting Idle Workstations for Parallel Computation.
Proceedings of the 1997 ACM SIGMETRICS international conference on Measurement and modeling of computer systems, 1997
Page Replacement Using Marginal Loss Functions.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1997
Scheduling in a High Performance Remote-Sensing Data Server.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997
Identifying DEF/USE Information of Statements that Construct and Traverse Dynamic Recursive Data Structures.
Proceedings of the Languages and Compilers for Parallel Computing, 1997
A Customizable Simulator for Workstation Networks.
Proceedings of the 11th International Parallel Processing Symposium (IPPS '97), 1997
Interoperability of Data Parallel Runtime Libraries.
Proceedings of the 11th International Parallel Processing Symposium (IPPS '97), 1997
Titan: A High-Performance Remote Sensing Database.
Proceedings of the Thirteenth International Conference on Data Engineering, 1997
Semantic Indexing for Complex Patient Grouping.
Proceedings of the AMIA 1997, 1997
Proceedings of the AMIA 1997, 1997
Parka on MIMD-supercomputers.
Proceedings of the Parallel Processing for Artificial Intelligence 3, 1997
1996
Parallelization Techniques for Sparse Matrix Applications.
J. Parallel Distributed Comput., 1996
Dynamic Linking for Mobile Programs.
Proceedings of the Mobile Object Systems, 1996
Sumatra: A Language for Resource-Aware Mobile Programs.
Proceedings of the Mobile Object Systems, 1996
Side Effect Analysis on User-Defined Reduction Functions with Dynamic Pointer-Linked Data Structures.
Proceedings of the Languages and Compilers for Parallel Computing, 1996
Study of Scalable Declustering Algorithms for Parallel Grid Files.
Proceedings of IPPS '96, 1996
Tuning the Performance of I/O-Intensive Parallel Applications.
Proceedings of the Fourth Workshop on I/O in Parallel and Distributed Systems, 1996
Experimental Evaluation of Efficient Sparse Matrix Distributions.
Proceedings of the 10th international conference on Supercomputing, 1996
Runtime Coupling of Data-Parallel Programs.
Proceedings of the 10th international conference on Supercomputing, 1996
An Interprocedural Framework for Placement of Asynchronous I/O Operations.
Proceedings of the 10th international conference on Supercomputing, 1996
A High Performance Image Database System for Remotely Sensed Imagery.
Proceedings of the Euro-Par '96 Parallel Processing, 1996
1995
Runtime Support and Compilation Methods for User-Specified Irregular Data Distributions.
IEEE Trans. Parallel Distributed Syst., 1995
An Integrated Runtime and Compile-Time Approach for Parallelizing Structured and Block Structured Applications.
IEEE Trans. Parallel Distributed Syst., 1995
Implementation of a parallel unstructured Euler solver on shared- and distributed-memory architectures.
J. Supercomput., 1995
Distributed Memory Compiler Design for Sparse Problems.
IEEE Trans. Computers, 1995
Runtime and Language Support for Compiling Adaptive Irregular Programs on Distributed-memory Machines.
Softw. Pract. Exp., 1995
Low Latency Messages on Distributed Memory Multiprocessors.
Sci. Program., 1995
Multiprocessor Runtime Support for Fine-Grained, Irregular Dags.
Parallel Process. Lett., 1995
Supporting irregular distributions using data-parallel languages.
IEEE Parallel Distributed Technol. Syst. Appl., 1995
Index Array Flattening Through Program Transformation.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995
Interprocedural Compilation of Irregular Applications for Distributed Memory Machines.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995
Runtime Support Dynamic Load Balancing Strategies for Structured Adaptive Applications.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995
Efficient Support for Irregular Applications on Distributed-Memory Machines.
Proceedings of the Fifth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), 1995
Interprocedural Partial Redundancy Elimination and its Application to Distributed Memory Compilation.
Proceedings of the ACM SIGPLAN'95 Conference on Programming Language Design and Implementation (PLDI), 1995
Runtime Support for Programming in Adaptive Parallel Environments.
Proceedings of the Languages, 1995
Interprocedural Data Flow Based Optimizations for Compilation of Irregular Problems.
Proceedings of the Languages and Compilers for Parallel Computing, 1995
Run-Time Techniques for Parallelizing Sparse Matrix Problems.
Proceedings of the Parallel Algorithms for Irregularly Structured Problems, 1995
Index translation schemes for adaptive computations on distributed memory multicomputers.
Proceedings of IPPS '95, 1995
Data parallel programming in an adaptive environment.
Proceedings of IPPS '95, 1995
1994
Communication Optimizations for Irregular Scientific Computations on Distributed Memory Architectures.
J. Parallel Distributed Comput., 1994
Run-time and compile-time support for adaptive irregular problems.
Proceedings of the Proceedings Supercomputing '94, 1994
Interprocedural Communication Optimizations for Distributed Memory Compilation.
Proceedings of the Languages and Compilers for Parallel Computing, 1994
High performance computing for land cover dynamics.
Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994
Value-Based Distributions in Fortran D.
Proceedings of the High-Performance Computing and Networking, 1994
1993
Runtime compilation techniques for data partitioning and communication schedule reuse.
Proceedings of the Proceedings Supercomputing '93, 1993
Common runtime support for high-performance parallel languages.
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Proceedings of the Proceedings Supercomputing '93, 1993
Compiler and runtime support for structured and block structured applications.
Proceedings of the Proceedings Supercomputing '93, 1993
Parallelizing Molecular Dynamics Codes using the Parti Software Primitives.
Proceedings of the Sixth SIAM Conference on Parallel Processing for Scientific Computing, 1993
Slicing Analysis and Indirect Accesses to Distributed Arrays.
Proceedings of the Languages and Compilers for Parallel Computing, 1993
1992
Embedding Data Mappers with Distributed Memory Machine Compilers.
Proceedings of the 2nd SIGPLAN Workshop on Languages, Compilers, and Run-Time Environments for Distributed Memory Multiprocessors, Boulder, Colorado, September 30, 1992
Performance of Distributed Sparse Cholesky Factorization with Pre-Scheduling.
Proceedings of the Proceedings Supercomputing '92, 1992
Compiler Analysis for Irregular Problems in Fortran D.
Proceedings of the Languages and Compilers for Parallel Computing, 1992
Compiler and runtime support for irregularly coupled regular meshes.
Proceedings of the 6th international conference on Supercomputing, 1992
1991
Run-Time Parallelization and Scheduling of Loops.
IEEE Trans. Computers, 1991
Performance Effects of Irregular Communication Patterns on Massively Parallel Multiprocessors.
J. Parallel Distributed Comput., 1991
Performance of Hashed Cache Data Migration Schemes on Multicomputers.
J. Parallel Distributed Comput., 1991
Multiprocessors and run-time compilation.
Concurr. Pract. Exp., 1991
Execution time support for adaptive scientific algorithms on distributed memory machines.
Concurr. Pract. Exp., 1991
Solving Unstructured Mesh Problems with Domain Decomposed GMRES/ILU.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991
Unstructured Mesh Problems, PARTI Primitives, and the ARF Compiler.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991
Runtime Compilation Methods for Multicomputers.
Proceedings of the International Conference on Parallel Processing, 1991
The Preprocessed Doacross Loop.
Proceedings of the International Conference on Parallel Processing, 1991
1990
An Anlysis of Scatter Decomposition.
IEEE Trans. Computers, 1990
Aggregation Methods for Solving Sparse Triangular Systems on Multiprocessors.
SIAM J. Sci. Comput., 1990
Run-Time Scheduling and Execution of Loops on Message Passing Machines.
J. Parallel Distributed Comput., 1990
Krylov Methods Preconditioned with Incompletely Factored Matrices on the CM-2.
J. Parallel Distributed Comput., 1990
1989
Delay point schedules for irregular parallel computations.
Int. J. Parallel Program., 1989
Run-Time Parallelization and Scheduling of Loops.
Proceedings of the ACM Symposium on Parallel Algorithms and Architectures, 1989
Domain Decomposition Methods in Aerodynamics.
Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, 1989
Execution Time Support for Scientific Programs on Distributed Memory Machines.
Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, 1989
Proceedings of the 3rd international conference on Supercomputing, 1989
1988
Dynamic Remapping of Parallel Computations with Varying Resource Demands.
IEEE Trans. Computers, 1988
Towards developing robust algorithms for solving partial differential equations on MIMD machines.
Parallel Comput., 1988
Parallel processing of biological sequence comparison algorithms.
Int. J. Parallel Program., 1988
Principles of runtime support for parallel processors.
Proceedings of the 2nd international conference on Supercomputing, 1988
An experimental study of methods for parallel preconditioned Krylov methods.
Proceedings of the Third Conference on Hypercube Concurrent Computers and Applications, 1988
1987
The PARTY Parallel Runtime System - Invited Talk.
Proceedings of the Third SIAM Conference on Parallel Processing for Scientific Computing, 1987
1986
A Comparative Analysis of Static and Dynamic Load Balancing Strategies.
Proceedings of the International Conference on Parallel Processing, 1986
1985
Reduction of the effects of the communication delays in scientific algorithms on message passing MIMD architectures.
Proceedings of the Selected Papers from the Second Conference on Parallel Processing for Scientific Computing, 1985
1984
Performance Analysis of Strategies for Moving Mesh Control.
Proceedings of the Tenth International Computer Measurement Group Conference, 1984