2024
Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.
PLoS Comput. Biol., 2024

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data.
Nat. Comput. Sci., 2024

2022
A supervised take on dimensionality reduction via hybrid subset selection.
Patterns, 2022

Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets.
Patterns, 2022

2013
INstruct: a database of high-quality 3D structurally resolved protein interactome networks.
Bioinform., 2013

2012
HINT: High-quality protein interactomes and their applications in understanding human disease.
BMC Syst. Biol., 2012

Genome-scale analysis of interaction dynamics reveals organization of biological networks.
Bioinform., 2012