AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold.
Database J. Biol. Databases Curation, 2023
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling.
Bioinform., 2022
DisEnrich: database of enriched regions in human dark proteome.
Bioinform., 2022
Mutation severity spectrum of rare alleles in the human genome is predictive of disease type.
PLoS Comput. Biol., 2020
pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes.
Bioinform., 2020
A sequence family database built on ECOD structural domains.
Bioinform., 2018
SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
BMC Bioinform., 2015
LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins.
Bioinform., 2015
ECOD: An Evolutionary Classification of Protein Domains.
PLoS Comput. Biol., 2014
Defining and predicting structurally conserved regions in protein superfamilies.
Bioinform., 2013
An automatic method for CASP9 free modeling structure prediction assessment.
Bioinform., 2011
Analysis of CASP8 targets, predictions and assessment methods.
Database J. Biol. Databases Curation, 2009
PROMALS3D web server for accurate multiple protein sequence and structure alignments.
Nucleic Acids Res., 2008
PROMALS web server for accurate multiple protein sequence alignments.
Nucleic Acids Res., 2007
PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Bioinform., 2007
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Bioinform., 2006
PCMA: fast and accurate multiple sequence alignment based on profile consistency.
Bioinform., 2003
AL2CO: calculation of positional conservation in a protein sequence alignment.
Bioinform., 2001