Challenging Complexity with Simplicity: Rethinking the Role of Single-Step Models in Computer-Aided Synthesis Planning.
J. Chem. Inf. Model., 2024
DeltaDock: A Unified Framework for Accurate, Efficient, and Physically Reliable Molecular Docking.
Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024
MolMiner: You Only Look Once for Chemical Structure Recognition.
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J. Chem. Inf. Model., 2022
Advances and Challenges in De Novo Drug Design Using Three-Dimensional Deep Generative Models.
J. Chem. Inf. Model., 2022
Prediction of liquid-liquid phase separating proteins using machine learning.
BMC Bioinform., 2022
Learning to design drug-like molecules in three-dimensional space using deep generative models.
CoRR, 2021
A transferable deep learning approach to fast screen potential antiviral drugs against SARS-CoV-2.
Briefings Bioinform., 2021
Super Edge-Connected Linear Hypergraphs.
Parallel Process. Lett., 2020
Analysis of protein features and machine learning algorithms for prediction of druggable proteins.
Quant. Biol., 2018
CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.
Nucleic Acids Res., 2018
Deep Learning Based Regression and Multiclass Models for Acute Oral Toxicity Prediction with Automatic Chemical Feature Extraction.
J. Chem. Inf. Model., November, 2017
Statistical Analysis and Prediction of Covalent Ligand Targeted Cysteine Residues.
J. Chem. Inf. Model., June, 2017
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.
Nucleic Acids Res., 2017
Computational Multitarget Drug Design.
J. Chem. Inf. Model., 2017
Molecular Graph Encoding Convolutional Neural Networks for Automatic Chemical Feature Extraction.
CoRR, 2017
Sequence-based prediction of protein protein interaction using a deep-learning algorithm.
BMC Bioinform., 2017
Deep Learning for Drug-Induced Liver Injury.
J. Chem. Inf. Model., 2015
<i>De Novo</i> Design of Multitarget Ligands with an Iterative Fragment-Growing Strategy.
J. Chem. Inf. Model., 2014
iDrug: a web-accessible and interactive drug discovery and design platform.
J. Cheminformatics, 2014
LigBuilder 2: A Practical <i>de Novo</i> Drug Design Approach.
J. Chem. Inf. Model., 2011
A Large Descriptor Set and a Probabilistic Kernel-Based Classifier Significantly Improve Druglikeness Classification.
J. Chem. Inf. Model., 2007
Improving the Quality of 3D-QSAR by Using Flexible-Ligand Receptor Models.
J. Chem. Inf. Model., 2005
Virtual Screening of Novel Noncovalent Inhibitors for SARS-CoV 3C-like Proteinase.
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J. Chem. Inf. Model., 2005
3D-QSAR and Receptor Modeling of Tyrosine Kinase Inhibitors with Flexible Atom Receptor Model (FLARM).
J. Chem. Inf. Comput. Sci., 2003