2019
ISDB: a database toolkit for storing and analyzing viral integration site data.
Bioinform., 2019

2015
: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial.
PLoS Comput. Biol., 2015

2014
An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load.
PLoS Comput. Biol., 2014

2013
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data.
Bioinform., 2013

2008
Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.
PLoS Comput. Biol., 2008

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag.
PLoS Comput. Biol., 2008

2007
Coping with Viral Diversity in HIV Vaccine Design.
PLoS Comput. Biol., 2007

ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.
Bioinform., 2007