2019
Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.
Genom. Proteom. Bioinform., 2019

2016
The Human Microbiome: Informatics Challenges and Opportunities.
Proceedings of the AMIA 2016, 2016

2012
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.
BMC Bioinform., 2012

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life.
Briefings Bioinform., 2012

Session introduction.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.
BMC Bioinform., 2011

Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome.
Proceedings of the BIOINFORMATICS 2011, 2011