2023
InterPro in 2022.
Nucleic Acids Res., January, 2023

2022
Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.
Nucleic Acids Res., 2022

2021
Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.
PLoS Comput. Biol., 2021

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
Nucleic Acids Res., 2021

The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res., 2021

Reactome and the Gene Ontology: digital convergence of data resources.
Bioinform., 2021

2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.
Nucleic Acids Res., 2019

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform., 2019

2017
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.
Nucleic Acids Res., 2017

InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

2016
PANTHER version 10: expanded protein families and functions, and analysis tools.
Nucleic Acids Res., 2016

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.
Database J. Biol. Databases Curation, 2016

2015
The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform., 2015

2014
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Nucleic Acids Res., 2014

2013
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees.
Nucleic Acids Res., 2013

2012
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res., 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinform., 2012

2011
BioPAX support in CellDesigner.
Bioinform., 2011

Applications of Pathway Logic Modeling to Target Identification.
Proceedings of the Formal Modeling: Actors, Open Systems, Biological Systems, 2011

2010
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.
Nucleic Acids Res., 2010

2007
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
Nucleic Acids Res., 2007

2006
Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools.
Nucleic Acids Res., 2006

2005
The PANTHER database of protein families, subfamilies, functions and pathways.
Nucleic Acids Res., 2005

2003
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification.
Nucleic Acids Res., 2003