Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.
Nucleic Acids Res., 2022
Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.
PLoS Comput. Biol., 2021
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
Nucleic Acids Res., 2021
Reactome and the Gene Ontology: digital convergence of data resources.
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Bioinform., 2021
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.
Nucleic Acids Res., 2019
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
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J. Integr. Bioinform., 2019
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.
Nucleic Acids Res., 2017
PANTHER version 10: expanded protein families and functions, and analysis tools.
Nucleic Acids Res., 2016
Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.
Database J. Biol. Databases Curation, 2016
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform., 2015
Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
J. Integr. Bioinform., 2015
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform., 2015
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
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Nucleic Acids Res., 2014
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees.
Nucleic Acids Res., 2013
BioPAX support in CellDesigner.
Bioinform., 2011
Applications of Pathway Logic Modeling to Target Identification.
Proceedings of the Formal Modeling: Actors, Open Systems, Biological Systems, 2011
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.
Nucleic Acids Res., 2010
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
Nucleic Acids Res., 2007
Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools.
Nucleic Acids Res., 2006
The PANTHER database of protein families, subfamilies, functions and pathways.
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Nucleic Acids Res., 2005
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification.
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Nucleic Acids Res., 2003