EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.

Profiling Chromatin Accessibility at Single-cell Resolution.

Single-cell regulome data analysis by SCRAT.

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.

ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.

Gene set bagging for estimating the probability a statistically significant result will replicate.

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.

iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding.

hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.

JAMIE: joint analysis of multiple ChIP-chip experiments.

TileProbe: modeling tiling array probe effects using publicly available data.

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.

TileMap: create chromosomal map of tiling array hybridizations.

AsMamDB: an alternative splice database of mammals.