Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features.
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J. Biomed. Semant., December, 2025
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023
Formatting SPARQL 1.1 via Parsing Expression Grammar.
Proceedings of the Workshop, 2023
TogoID: an exploratory ID converter to bridge biological datasets.
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Bioinform., 2022
G2GML: Graph to Graph Mapping Language for Bridging RDF and Property Graphs.
Proceedings of the ISWC 2020 Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 19th International Semantic Web Conference (ISWC 2020), 2020
SPANG: A SPARQL client with templating, one-liner functionality, and API.
Proceedings of the ISWC 2020 Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 19th International Semantic Web Conference (ISWC 2020), 2020
MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.
Nucleic Acids Res., 2019
Property Graph Exchange Format.
CoRR, 2019
TogoGenome/TogoStanza: modularized Semantic Web genome database.
Database J. Biol. Databases Curation, 2019
Mapping RDF Graphs to Property Graphs.
Proceedings of the Workshop and Poster Proceedings of the 8th Joint International Semantic Technology Conference co-located with the 8th Joint International Semantic Technology Conference (JIST 2018), 2018
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases.
BMC Bioinform., 2017
Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017
The Orthology Ontology: development and applications.
J. Biomed. Semant., 2016
MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.
Nucleic Acids Res., 2015
Towards the Semantic Standardization of Orthology Content.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015
SPANG: A Command-line Client Supporting Query Generation for Distributed SPARQL Endpoints.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.
BMC Bioinform., 2014
MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.
Nucleic Acids Res., 2013
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses.
Database J. Biol. Databases Curation, 2011