SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.
Bioinform., 2024
Target-oriented Reference Construction for supervised cell type identification in scRNA-seq.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024
Detecting and Subtyping Anomalous Single Cells with M2ASDA.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024
Spatiotemporal attention boosts calling of complicated variations from long reads' alignment data.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024
MIXER: Identifying Co-expressed Genes in Multimodal Transcriptomic Sequencing Data.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024
A cofunctional grouping-based approach for non-redundant feature gene selection in unannotated single-cell RNA-seq analysis.
Briefings Bioinform., March, 2023
Differential RNA methylation analysis for MeRIP-seq data under general experimental design.
Bioinform., October, 2022
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
Bioinform., 2022
A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq.
Briefings Bioinform., 2022
Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach.
Bioinform., 2021
Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.
Bioinform., 2021
Accurate feature selection improves single-cell RNA-seq cell clustering.
Briefings Bioinform., 2021
A novel virtual drug screening pipeline with deep-leaning as core component identifies inhibitor of pancreatic alpha-amylase.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Simulation, power evaluation and sample size recommendation for single-cell RNA-seq.
Bioinform., 2020
Robust partial reference-free cell composition estimation from tissue expression.
Bioinform., 2020
A comprehensive review of computational prediction of genome-wide features.
Briefings Bioinform., 2020
Differential methylation analysis for bisulfite sequencing using DSS.
Quant. Biol., 2019
Dissecting differential signals in high-throughput data from complex tissues.
Bioinform., 2019
Disease prediction by cell-free DNA methylation.
Briefings Bioinform., 2019
Two-phase differential expression analysis for single cell RNA-seq.
Bioinform., 2018
Accounting for tumor purity improves cancer subtype classification from DNA methylation data.
Bioinform., 2017
Measuring the spatial correlations of protein binding sites.
Bioinform., 2016
Differential methylation analysis for BS-seq data under general experimental design.
Bioinform., 2016
Experimental Design and Power Calculation for RNA-seq Experiments.
Proceedings of the Statistical Genomics - Methods and Protocols, 2016
Predicting tumor purity from methylation microarray data.
Bioinform., 2015
PROPER: comprehensive power evaluation for differential expression using RNA-seq.
Bioinform., 2015
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.
Bioinform., 2015
JAMIE: joint analysis of multiple ChIP-chip experiments.
Bioinform., 2010
R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.
Bioinform., 2007
R/qtl: QTL Mapping in Experimental Crosses.
Bioinform., 2003