2024
PLS-based gene subset augmentation and tumor-specific gene identification.
Comput. Biol. Medicine, 2024
Introducing Prediction Concept into Data Envelopment Analysis Using Classifier in Economic Forecast.
Proceedings of the Intelligent Computing, 2024
2023
Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes.
BMC Bioinform., December, 2023
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies.
Genom. Proteom. Bioinform., June, 2023
2022
scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution.
Nucleic Acids Res., 2022
scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data.
Briefings Bioinform., 2022
2021
scLINE: A multi-network integration framework based on network embedding for representation of single-cell RNA-seq data.
J. Biomed. Informatics, 2021
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
Bioinform., 2021
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering.
Briefings Bioinform., 2021
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.
Briefings Bioinform., 2021
Whole Genome Analysis of Polyadenylation Sites in Long Non-coding RNAs in Oryza Sativa.
Proceedings of the ICBBT 2021: 13th International Conference on Bioinformatics and Biomedical Technology, Xi'an, China, May 21, 2021
2020
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
Bioinform., 2020
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size.
Bioinform., 2020
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.
Briefings Bioinform., 2020
SCNMLRR: Single Cell Clustering Based on Low-rank Non-negative Matrix Factorization.
Proceedings of the 9th International Conference on Bioinformatics and Biomedical Science, 2020
A Pipeline to Identify Novel 3' UTRs and Widespread Intergenic Transcription by Combination of Polyadenylation Sites and RNA-seq Data.
Proceedings of the 9th International Conference on Bioinformatics and Biomedical Science, 2020
Gene Screening for Autism Based on Cell-type-specific Predictive Models.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble.
Knowl. Based Syst., 2019
Partial maximum correlation information: A new feature selection method for microarray data classification.
Neurocomputing, 2019
Research on a reduced order closed-loop identification algorithms based on AIC for process with time delay.
Clust. Comput., 2019
AStrap: identification of alternative splicing from transcript sequences without a reference genome.
Bioinform., 2019
An Improved Bayesian Integrated ICA Approach for Control Loop Diagnosis with Small Sample Size.
Proceedings of the International Conference on Control, Automation and Diagnosis, 2019
Human brain cell type-specific gene co-expression associated with autism spectrum disorder.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
A novel feature selection method to predict protein structural class.
Comput. Biol. Chem., 2018
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.
Bioinform., 2018
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.
Bioinform., 2018
AEGS: identifying aberrantly expressed gene sets for differential variability analysis.
Bioinform., 2018
2017
Laser-Induced Breakdown Spectroscopy for Rapid Discrimination of Heavy-Metal-Contaminated Seafood <i>Tegillarca granosa</i>.
Sensors, 2017
Feature selection by maximizing correlation information for integrated high-dimensional protein data.
Pattern Recognit. Lett., 2017
An innovative one-class least squares support vector machine model based on continuous cognition.
Knowl. Based Syst., 2017
PAcluster: Clustering polyadenylation site data using canonical correlation analysis.
J. Bioinform. Comput. Biol., 2017
2016
A new small-world network model for instant messaging chat network.
Proceedings of the 11th System of Systems Engineering Conference, 2016
Integrating principal component analysis and optimal histogram estimation for Bayesian control loop diagnosis.
Proceedings of the IEEE International Conference on Advanced Intelligent Mechatronics, 2016
2015
Expectation-Maximization Approach to Fault Diagnosis With Missing Data.
IEEE Trans. Ind. Electron., 2015
VAAPA: A web platform for visualization and analysis of alternative polyadenylation.
Comput. Biol. Medicine, 2015
PASPA: a web server for mRNA poly(A) site predictions in plants and algae.
Bioinform., 2015
Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes.
Briefings Bioinform., 2015
Bayesian Fault Diagnosis Using Principal Component Analysis Approach with Continuous Evidence.
Proceedings of the Information Technology and Intelligent Transportation Systems, 2015
Bayesian Approach to Fault Diagnosis with Ambiguous Historical Modes.
Proceedings of the Information Technology and Intelligent Transportation Systems, 2015
Oscillation Source Detection for Large-Scale Chemical Process with Interpretative Structural Model.
Proceedings of the Information Technology and Intelligent Transportation Systems, 2015
2014
PLS-based recursive feature elimination for high-dimensional small sample.
Knowl. Based Syst., 2014
Solving partially observable problems with inaccurate PSR models.
Inf. Sci., 2014
Feature selection for high-dimensional multi-category data using PLS-based local recursive feature elimination.
Expert Syst. Appl., 2014
2013
Identification and predictive control for a circulation fluidized bed boiler.
Knowl. Based Syst., 2013
2012
A Dynamic AdaBoost Algorithm With Adaptive Changes of Loss Function.
IEEE Trans. Syst. Man Cybern. Part C, 2012
A novel two-level nearest neighbor classification algorithm using an adaptive distance metric.
Knowl. Based Syst., 2012
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis.
Bioinform., 2012
High-throughput antibody sequence alignment based on GPU computing.
Proceedings of the ACM Symposium on Applied Computing, 2012
PATMAP: Polyadenylation Site Identification from Next-Generation Sequencing Data.
Proceedings of the Hybrid Artificial Intelligent Systems - 7th International Conference, 2012
2011
PLS-Based Gene Selection and Identification of Tumor-Specific Genes.
IEEE Trans. Syst. Man Cybern. Part C, 2011
Hybrid intelligent control scheme of a polymerization kettle for ACR production.
Knowl. Based Syst., 2011
Using partial least squares and support vector machines for bankruptcy prediction.
Expert Syst. Appl., 2011
Identification of plant messenger RNA polyadenylation sites using length-variable second order Markov model.
Proceedings of the IEEE International Conference on Systems, 2011
2010
A new method of information decision-making based on D-S evidence theory.
Proceedings of the IEEE International Conference on Systems, 2010
Messenger RNA Polyadenylation Site Recognition in Green Alga <i>Chlamydomonas Reinhardtii</i>.
Proceedings of the Advances in Neural Networks, 2010
Modeling and fuzzy controller design for ACR polymerizing-kettles.
Proceedings of the 8th IEEE International Conference on Control and Automation, 2010
Using Learned PSR Model for Planning under Uncertainty.
Proceedings of the Advances in Artificial Intelligence, 2010
2009
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.
Nucleic Acids Res., 2009
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv.
Proceedings of the Neural Information Processing, 16th International Conference, 2009
The Application of an Improved Particle Swarm Optimization (PSO) Algorithm in Pairwise Sequence Alignment.
Proceedings of the 2009 International Conference on Computational Intelligence and Security, 2009
PROBER: Segmentation and Differential Analysis Tool for Tiling Microarray Data.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009
2007
WebTraceMiner: a web service for processing and mining EST sequence trace files.
Nucleic Acids Res., 2007
Predictive modeling of plant messenger RNA polyadenylation sites.
BMC Bioinform., 2007