Ribo-ODDR: oligo design pipeline for experiment-specific rRNA depletion in Ribo-seq.

Structure of conflict graphs in constraint alignment problems and algorithms.

RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.

RAIN: RNA-protein Association and Interaction Networks.

SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.

Constrained Alignments of a Pair of Graphs.

BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks.