Fast characterization of segmental duplication structure in multiple genome assemblies.

Detecting high-scoring local alignments in pangenome graphs.

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.

Alignment-free clustering of UMI tagged DNA molecules.

lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.

Dynamic Alignment-Free and Reference-Free Read Compression.

Fast characterization of segmental duplications in genome assemblies.

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.

Discovery and genotyping of novel sequence insertions in many sequenced individuals.

CoLoRMap: Correcting Long Reads by Mapping short reads.

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Dissect: detection and characterization of novel structural alterations in transcribed sequences.

Sensitive and fast mapping of di-base encoded reads.

SCALCE: boosting sequence compression algorithms using locally consistent encoding.

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.