Ten simple rules to run a successful BioHackathon.
PLoS Comput. Biol., 2020
Shō-coin: A Knowledge-Based Economy for Life Sciences.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017
Using the relation ontology Metarel for modelling Linked Data as multi-digraphs.
Semantic Web, 2014
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.
J. Biomed. Semant., 2013
Gauging triple stores with actual biological data.
BMC Bioinform., 2012
Profiling of Semantically Annotated Proteins.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012
NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
Reasoning with bio-ontologies: using relational closure rules to enable practical querying.
Bioinform., 2011
Flexibility and utility of the cell cycle ontology.
Appl. Ontology, 2011
The RDF foundry: call for an initiative to build enhanced RDF resources for biological data integration.
Proceedings of the International Conference on Web Intelligence, Mining and Semantics, 2011
Semantic systems biology: enabling integrative biology via semantic web technologies.
Proceedings of the International Conference on Web Intelligence, Mining and Semantics, 2011
OPPL-Galaxy: enhancing ontology exploitation in galaxy with OPPL.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011
ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.
BMC Bioinform., 2010
Benchmarking Triple Stores with Biological Data.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010
Towards semantic systems biology: biological knowledge management using semantic web technologies.
PhD thesis, 2009
BioGateway: a semantic systems biology tool for the life sciences.
BMC Bioinform., 2009
Biological knowledge management: the emerging role of the Semantic Web technologies.
Briefings Bioinform., 2009
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.
BMC Bioinform., 2008
ONTO-PERL: An API for supporting the development and analysis of bio-ontologies.
Bioinform., 2008
The Cell Cycle Ontology: An Application Ontology Supporting the Life Sciences.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
BioGateway: Integrated RDF for Life Science Queries.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
Structuring the Life Science Resourceome for Semantic Systems Biology: Lessons from the BioGateway Project.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
Transforming the Axiomisation of Ontologies: The Ontology Pre-Processor Language.
Proceedings of the Fourth OWLED Workshop on OWL: Experiences and Directions, 2008
Applying Ontology Design Patterns in Bio-ontologies.
Proceedings of the Knowledge Engineering: Practice and Patterns, 2008
A Cell-Cycle Knowledge Integration Framework.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006
The aMAZE LightBench: a web interface to a relational database of cellular processes.
Nucleic Acids Res., 2004