Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.
PLoS Comput. Biol., 2023
Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
Bioinform., 2022
A Multi-Scale Approach to Modeling E. coli Chemotaxis.
Entropy, 2020
Deriving the bodily grounding of living beings with molecular autopoiesis.
Adapt. Behav., 2020
The Biological Foundations of Enactivism: A Report on a Workshop Held at Artificial Life XV.
Artif. Life, 2018
Lineage selection leads to evolvability at large population sizes.
Proceedings of the Fourteenth European Conference Artificial Life, 2017
Structural coupling of a Potts model cell.
Proceedings of the Fourteenth European Conference Artificial Life, 2017
Exploring the Space of Viable Configurations in a Model of Metabolism-Boundary Co-construction.
Artif. Life, 2016
The Structure of Ontogenies in a Model Protocell.
Artif. Life, 2016
Ontogeny and adaptivity in a model protocell.
Proceedings of the Thirteenth European Conference Artificial Life, 2015
The evolution and analysis of action switching in embodied agents.
Adapt. Behav., 2014
Quantifying Robustness in a Spatial Model of Metabolism-Boundary Co-Construction.
Proceedings of the Fourteenth International Conference on the Simulation and Synthesis of Living Systems, 2014