Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.
,
,
,
,
,
,
,
,
,
,
,
,
,
Patterns, 2021
A flexible search system for high-accuracy identification of biological entities and molecules.
J. Open Source Softw., 2021
Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes.
BMC Bioinform., 2021
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.
,
,
,
,
,
,
,
,
,
,
,
Bioinform., 2021
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
Nucleic Acids Res., 2020
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
J. Integr. Bioinform., 2019
Large-scale automated machine reading discovers new cancer-driving mechanisms.
Database J. Biol. Databases Curation, 2018
PaxtoolsR: pathway analysis in R using Pathway Commons.
Bioinform., 2016
Collaborative Workspaces for Pathway Curation.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform., 2015
Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
J. Integr. Bioinform., 2015
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform., 2015
Pattern search in BioPAX models.
Bioinform., 2014
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.
Bioinform., 2014
Using Biological Pathway Data with Paxtools.
PLoS Comput. Biol., 2013
Pathway Commons, a web resource for biological pathway data.
Nucleic Acids Res., 2011
BioPAX support in CellDesigner.
Bioinform., 2011
ChiBE: interactive visualization and manipulation of BioPAX pathway models.
Bioinform., 2010
A layout algorithm for undirected compound graphs.
Inf. Sci., 2009
Algorithms for effective querying of compound graph-based pathway databases.
BMC Bioinform., 2009
Patika<i>web</i>: a Web interface for analyzing biological pathways through advanced querying and visualization.
Bioinform., 2006
An ontology for computer-aided modeling of cellular processes (Bilgisayar destekli hücresel yolak modellemesi)
PhD thesis, 2005
An ontology for collaborative construction and analysis of cellular pathways.
Bioinform., 2004
A Compound Graph Layout Algorithm for Biological Pathways.
Proceedings of the Graph Drawing, 12th International Symposium, 2004
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
Bioinform., 2002