AC-DIAMOND v1: accelerating large-scale DNA-protein alignment.
Bioinform., 2018
BitFlow: Exploiting Vector Parallelism for Binary Neural Networks on CPU.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract).
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018
Memory- and time-efficient solutions for large-scale metagenomic sequence analysis.
PhD thesis, 2017
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
BMC Bioinform., 2017
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing.
Proceedings of the Bioinformatics and Biomedical Engineering, 2016
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph.
Bioinform., 2015