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2024
BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery.
[DOI]
Peter St. John
,
Dejun Lin
,
Polina Binder
,
Malcolm Greaves
,
Vega Shah
,
John St. John
,
Adrian Lange
,
Patrick D. Hsu
,
Rajesh Illango
,
Arvind Ramanathan
,
Anima Anandkumar
,
David H. Brookes
,
Akosua Busia
,
Abhishaike Mahajan
,
Stephen Malina
,
Neha Prasad
,
Sam Sinai
,
Lindsay Edwards
,
Thomas Gaudelet
,
Cristian Regep
,
Martin Steinegger
,
Burkhard Rost
,
Alexander Brace
,
Kyle Hippe
,
Luca Naef
,
Keisuke Kamata
,
George Armstrong
,
Kevin Boyd
,
Zhonglin Cao
,
Han-Yi Chou
,
Simon Chu
,
Allan dos Santos Costa
,
Sajad Darabi
,
Eric Dawson
,
Kieran Didi
,
Cong Fu
,
Mario Geiger
,
Michelle Gill
,
Darren Hsu
,
Gagan Kaushik
,
Maria Korshunova
,
Steven Kothen-Hill
,
Youhan Lee
,
Meng Liu
,
Micha Livne
,
Zachary McClure
,
Jonathan Mitchell
,
Alireza Moradzadeh
,
Ohad Mosafi
,
Youssef Nashed
,
Saee Paliwal
,
Yuxing Peng
,
Sara Rabhi
,
Farhad Ramezanghorbani
,
Danny Reidenbach
,
Camir Ricketts
,
Brian Roland
,
Kushal Shah
,
Tyler Shimko
,
Hassan Sirelkhatim
,
Savitha Srinivasan
,
Abraham C. Stern
,
Dorota Toczydlowska
,
Srimukh Prasad Veccham
,
Niccolò Alberto Elia Venanzi
,
Anton Vorontsov
,
Jared Wilber
,
Isabel Wilkinson
,
Wei Jing Wong
,
Eva Xue
,
Cory Ye
,
Xin Yu
,
Yang Zhang
,
Guoqing Zhou
,
Becca Zandstein
,
Christian Dallago
,
Bruno Trentini
,
Emine Küçükbenli
,
Timur Rvachov
,
Eddie Calleja
,
Johnny Israeli
,
Harry Clifford
,
Risto Haukioja
,
Nicholas Haemel
,
Kyle Tretina
,
Neha Tadimeti
,
Anthony B. Costa
CoRR, 2024
2021
HiCRep.py: fast comparison of Hi-C contact matrices in Python.
[DOI]
Dejun Lin
,
Justin Sanders
,
William Stafford Noble
Bioinform., 2021
2018
Unsupervised embedding of single-cell Hi-C data.
[DOI]
Jie Liu
,
Dejun Lin
,
Galip Gürkan Yardimci
,
William Stafford Noble
Bioinform., 2018