2024
Detecting goals of care conversations in clinical notes with active learning.
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J. Biomed. Informatics, 2024
Automatic sentence segmentation of clinical record narratives in real-world data.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024
2023
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.
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Database J. Biol. Databases Curation, February, 2023
2022
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022.
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Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022
2021
Active neural networks to detect mentions of changes to medication treatment in social media.
J. Am. Medical Informatics Assoc., 2021
DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter.
J. Am. Medical Informatics Assoc., 2021
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021.
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Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021
Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines.
Proceedings of the Artificial Intelligence in Medicine, 2021
2020
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Bioinform., 2020
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020.
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Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, 2020
2019
Towards scaling Twitter for digital epidemiology of birth defects.
npj Digit. Medicine, 2019
Deep neural networks ensemble for detecting medication mentions in tweets.
J. Am. Medical Informatics Assoc., 2019
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019.
Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, 2019
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.
Proceedings of the 13th International Workshop on Semantic Evaluation, 2019
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
Text Mining and Machine Learning for Precision Medicine.
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Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
2018
Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter.
J. Biomed. Informatics, 2018
Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research.
CoRR, 2018
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.
Bioinform., 2018
Deep neural networks and distant supervision for geographic location mention extraction.
Bioinform., 2018
Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018.
Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, 2018
Dealing with Medication Non-Adherence Expressions in Twitter.
Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, 2018
2017
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.
Database J. Biol. Databases Curation, 2017
2016
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.
J. Am. Medical Informatics Assoc., 2016
Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia.
Proceedings of the NAACL HLT 2016, 2016
2015
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.
Bioinform., 2015
DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter.
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015
Tree-Structured Named Entities Extraction from Competing Speech Transcriptions.
Proceedings of the Natural Language Processing and Information Systems, 2015
2014
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
2013
Which Factors Contribute to Resolving Coreference Chains with Bayesian Networks?.
Int. J. Comput. Linguistics Appl., 2013
2011
Understand the effects of erroneous annotations produced by NLP pipelines, a case study on the pronominal anaphora resolution.
Trait. Autom. des Langues, 2011
2009
ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences.
Proceedings of the Actes de la 16ème conférence sur le Traitement Automatique des Langues Naturelles. Démonstrations, 2009
2008
Influence des annotations imparfaites sur les systèmes de Traitement Automatique des Langues, un cadre applicatif: la résolution de l'anaphore pronominale. (Effects of imperfect annotations on Natural Language Processing systems, an applicative case study: the pronominal anaphora resolution).
PhD thesis, 2008
2007
Les réseaux bayésiens : un formalisme adapté au traitement automatique des langues ?
Rev. d'Intelligence Artif., 2007
Identifier les pronoms anaphoriques et trouver leurs antécédents : l'intérêt de la classification bayésienne.
Proceedings of the Actes de la 14ème conférence sur le Traitement Automatique des Langues Naturelles. Articles longs, 2007
2006
The ALVIS Format for Linguistically Annotated Documents.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006
Bayesian Network, a Model for NLP?
Proceedings of the EACL 2006, 2006
Une infrastructure pour l'annotation linguistique de documents issus du web : le projet ALVIS.
Proceedings of the Apprentissage Artificiel et Fouille de Données, 2006
2004
La relation de synonymie en génomique.
Proceedings of the Actes de la 11ème conférence sur le Traitement Automatique des Langues Naturelles. REncontres jeunes Chercheurs en Informatique pour le Traitement Automatique des Langues (Posters), 2004
Event-Based Information Extraction for the Biomedical Domain: the Caderige Project.
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Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004