Executorlib - Up-scaling Python workflows for hierarchical heterogenous high-performance computing.
J. Open Source Softw., May, 2025
Parameter uncertainties for imperfect surrogate models in the low-noise regime.
Mach. Learn. Sci. Technol., 2025
MolSieve: A Progressive Visual Analytics System for Molecular Dynamics Simulations.
IEEE Trans. Vis. Comput. Graph., January, 2024
Breaking the mold: overcoming the time constraints of molecular dynamics on general-purpose hardware.
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CoRR, 2024
Misspecification uncertainties in near-deterministic regression.
CoRR, 2024
Breaking the Molecular Dynamics Timescale Barrier Using a Wafer-Scale System.
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Proceedings of the International Conference for High Performance Computing, 2024
Regression-Based Projection for Learning Mori-Zwanzig Operators.
SIAM J. Appl. Dyn. Syst., December, 2023
Resource allocation for task-level speculative scientific applications: A proof of concept using Parallel Trajectory Splicing.
Parallel Comput., 2022
Combining machine-learned and empirical force fields with the parareal algorithm: application to the diffusion of atomistic defects.
CoRR, 2022
MDZ: An Efficient Error-bounded Lossy Compressor for Molecular Dynamics.
Proceedings of the 38th IEEE International Conference on Data Engineering, 2022
Pairwise Difference Regression: A Machine Learning Meta-algorithm for Improved Prediction and Uncertainty Quantification in Chemical Search.
J. Chem. Inf. Model., 2021
Rapid Exploration of Optimization Strategies on Advanced Architectures using TestSNAP and LAMMPS.
CoRR, 2020
Testing Research Software: A Case Study.
Proceedings of the Computational Science - ICCS 2020, 2020
Programmable Caches with a Data Management Language and Policy Engine.
Proceedings of the 18th IEEE/ACM International Symposium on Cluster, 2018
Discrete event performance prediction of speculatively parallel temperature-accelerated dynamics.
Simul., 2016
TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics.
ACM Trans. Model. Comput. Simul., 2015
Analysis of Transition State Theory Rates upon Spatial Coarse-Graining.
Multiscale Model. Simul., 2015
A mathematical formalization of the parallel replica dynamics.
Monte Carlo Methods Appl., 2012