Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities.
Concurr. Comput. Pract. Exp., 2020
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment.
J. Parallel Distributed Comput., 2018
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
Bioinform., 2016
Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions.
Proceedings of the Ninth International Conference on Complex, 2015
MSA-GPU: Exact Multiple Sequence Alignment Using GPU.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013