2024

Interpretability analysis on a pathology foundation model reveals biologically relevant embeddings across modalities.

[DOI]

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Harshith Padigela

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Jennifer A. Hipp

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Harsha Pokkalla

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CoRR, 2024

2021

Inference of cell dynamics on perturbation data using adjoint sensitivity.

[DOI]

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CoRR, 2021

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

[DOI]

Esther Rheinbay

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Morten Muhlig Nielsen

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Federico Abascal

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Henrik Hornshøj

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Randi Istrup Juul

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Radhakrishnan Sabarinathan

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Andrés Lanzós

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Yosef E. Maruvka

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Samirkumar B. Amin

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Pratiti Bandopadhayay

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Keith A. Boroevich

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John Busanovich

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Joana Carlevaro-Fita

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Dimple Chakravarty

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Calvin Wing Yiu Chan

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Priyanka Dhingra

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Nuno A. Fonseca

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Abel Gonzalez-Perez

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Mark P. Hamilton

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Nicholas J. Haradhvala

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Todd A. Johnson

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Abdullah Kahraman

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Kjong-Van Lehmann

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Eric Minwei Liu

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Lucas Lochovsky

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Nicola D. Roberts

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Steven E. Schumacher

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Nikos Sidiropoulos

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Lina Sieverling

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Nasa Sinnott-Armstrong

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David Tamborero

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Cheng-Zhong Zhang

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Marcin Imielinski

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Michael S. Lawrence

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Christian von Mering

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Hidewaki Nakagawa

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Benjamin J. Raphael

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Lincoln D. Stein

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Joshua M. Stuart

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Tatsuhiko Tsunoda

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David A. Wheeler

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Peter J. Campbell

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Núria López-Bigas

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Jonathan Barenboim

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Jung Kyoon Choi

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Carlo Gambacorti Passerini

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Arif Ozgun Harmanci

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Patrick D. McGillivray

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William Meyerson

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Marta Paczkowska

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Jakob Skou Pedersen

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Sergio Pulido-Tamayo

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Iker Reyes-Salazar

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Matthew A. Reyna

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Carlota Rubio-Perez

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Süleyman Cenk Sahinalp

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Leonidas Salichos

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Mark Shackleton

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Raunak Shrestha

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Alfonso Valencia

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Lieven P. C. Verbeke

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Jonathan Warrell

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Sebastian M. Waszak

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Joachim Weischenfeldt

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Kadir C. Akdemir

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Adrian Baez-Ortega

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Paul C. Boutros

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David D. L. Bowtell

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Kathleen H. Burns

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Isidro Cortés-Ciriano

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Ana Dueso-Barroso

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Andrew J. Dunford

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Paul A. Edwards

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Xavier Estivill

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Dariush Etemadmoghadam

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Milana Frenkel-Morgenstern

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Dmitry A. Gordenin

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David T. W. Jones

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Marat D. Kazanov

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Leszek J. Klimczak

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Eunjung Alice Lee

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Jake June-Koo Lee

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Geoff MacIntyre

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Florian Markowetz

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Matthew Meyerson

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Fabio C. P. Navarro

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Stephan Ossowski

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John V. Pearson

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Montserrat Puiggròs

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Steven A. Roberts

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Bernardo Rodriguez-Martin

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Izar Villasante

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Jeremiah A. Wala

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Nat., 2020