Predicting gene structure changes resulting from genetic variants via exon definition features.

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.

WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing.

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.

Quantitative measures for the management and comparison of annotated genomes.