Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data.

Reliable scaling of position weight matrices for binding strength comparisons between transcription factors.

A Graphical Modelling Approach to the Dissection of Highly Correlated Transcription Factor Binding Site Profiles.

A comprehensive computational model of facilitated diffusion in prokaryotes.

GRiP: a computational tool to simulate transcription factor binding in prokaryotes.

FlyTF: improved annotation and enhanced functionality of the <i>Drosophila</i> transcription factor database.

BioSAVE: Display of scored annotation within a sequence context.

FlyTF: a systematic review of site-specific transcription factors in the fruit fly <i>Drosophila melanogaster</i>.

Gene-Ontology-based clustering of gene expression data.