2022
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Briefings Bioinform., 2022

Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.
Briefings Bioinform., 2022

2021
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
Bioinform., November, 2021

DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Briefings Bioinform., 2021