VariantSurvival: a tool to identify genotype-treatment response.
Frontiers Bioinform., May, 2023
Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive.
F1000Research, 2020
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases.
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F1000Research, 2019
Magic-BLAST, an accurate RNA-seq aligner for long and short reads.
BMC Bioinform., 2019
Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.
Bioinform., 2019
Matchmaking in Bioinformatics.
F1000Research, 2018
NovoGraph: Genome graph construction from multiple long-read <i>de novo</i> assemblies.
F1000Research, 2018
Viewing RNA-seq data on the entire human genome.
F1000Research, 2017
Extending TCGA queries to automatically identify analogous genomic data from dbGaP.
F1000Research, 2017
DangerTrack: A scoring system to detect difficult-to-assess regions.
F1000Research, 2017
PubRunner: A light-weight framework for updating text mining results.
F1000Research, 2017
MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed.
Proceedings of the AMIA 2017, 2017
Harmonizing User-defined Phenotypic Variables using Latent Semantic Analysis (LSA) to Improve Data Discoverability in dbGaP.
Proceedings of the AMIA 2017, 2017
MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.
F1000Research, 2016
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping.
F1000Research, 2016
A cloud-based learning environment for comparing RNA-seq aligners.
F1000Research, 2016