2023
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Nucleic Acids Res., January, 2023

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support.
Int. J. High Perform. Comput. Appl., 2023

2021
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.
Briefings Bioinform., 2021

2020
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
Nucleic Acids Res., 2020

2019
PATRIC as a unique resource for studying antimicrobial resistance.
Briefings Bioinform., 2019

2017
Methods for Analysis of Prokaryotic Genome Architecture.
PhD thesis, 2017

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
Nucleic Acids Res., 2017

2015
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.
Bioinform., 2015

2014
PATRIC, the bacterial bioinformatics database and analysis resource.
Nucleic Acids Res., 2014

Using Entropy Estimates for DAG-Based Ontologies.
CoRR, 2014

2010
Global-scale distributed I/O with ParaMEDIC.
Concurr. Comput. Pract. Exp., 2010

Missing genes in the annotation of prokaryotic genomes.
BMC Bioinform., 2010

2009
The Genome Reverse Compiler: an explorative annotation tool.
BMC Bioinform., 2009