Atsushi Niida

According to our database, Atsushi Niida authored at least 16 papers between 2008 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model.

Takanori Hasegawa, Rui Yamaguchi, Atsushi Niida, Satoru Miyano, Seiya Imoto

J. Frankl. Inst., 2020

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens.

Takanori Hasegawa, Shuto Hayashi, Eigo Shimizu, Shinichi Mizuno, Atsushi Niida, Rui Yamaguchi, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto

Bioinform., 2020

2017

phyC: Clustering cancer evolutionary trees.

Yusuke Matsui, Atsushi Niida, Ryutaro Uchi, Koshi Mimori, Satoru Miyano, Teppei Shimamura

PLoS Comput. Biol., 2017

Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level.

Heewon Park, Atsushi Niida, Seiya Imoto, Satoru Miyano

J. Comput. Biol., 2017

2016

Binary contingency table method for analysing gene mutation in cancer genome.

Emi Ayada, Takanori Hasegawa, Atsushi Niida, Satoru Miyano, Seiya Imoto

Int. J. Bioinform. Res. Appl., 2016

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models.

Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto

Comput. Stat. Data Anal., 2016

2015

Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis.

Heewon Park, Atsushi Niida, Satoru Miyano, Seiya Imoto

J. Comput. Biol., 2015

Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome.

Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto

Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2013

Multilayer Cluster Heat Map Visualizing Biological Tensor Data.

Atsushi Niida, Georg Tremmel, Seiya Imoto, Satoru Miyano

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012

Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods.

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Statistical model-based testing to evaluate the recurrence of genomic aberrations.

Atsushi Niida, Seiya Imoto, Teppei Shimamura, Satoru Miyano

Bioinform., 2012

2010

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano

Bioinform., 2010

Network profiling analysis for generating modulator-dependent gene networks.

Teppei Shimamura, Seiya Imoto, Atsushi Niida, Masao Nagasaki, Rui Yamaguchi, Satoru Miyano

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning.

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

Gene set-based module discovery in the breast cancer transcriptome.

Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama

BMC Bioinform., 2009

2008

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.

Atsushi Niida, Andrew D. Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama

BMC Bioinform., 2008