Atsuko Yamaguchi
Orcid: 0000-0001-7538-5337
According to our database1,
Atsuko Yamaguchi
authored at least 47 papers
between 1997 and 2024.
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Bibliography
2024
A semantic design for the biological processes associated with intrinsically disordered proteins.
Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024
Proceedings of the 16th IIAI International Congress on Advanced Applied Informatics, 2024
2023
Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023
Proceedings of the Workshop, 2023
2021
Proceedings of the IJCKG'21: The 10th International Joint Conference on Knowledge Graphs, Virtual Event, Thailand, December 6, 2021
2020
F1000Research, 2020
2019
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.
F1000Research, 2019
Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019
Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019
UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences.
Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019
Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences.
Proceedings of the Semantic Technology - 9th Joint International Conference, 2019
Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts.
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
2018
Database J. Biol. Databases Curation, 2018
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment.
Proceedings of the Semantic Technology - 8th Joint International Conference, 2018
2017
LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017
Proceedings of the Semantic Technology - 7th Joint International Conference, 2017
2016
Umaka-Yummy Data: A Place to Facilitate Communication between Data Providers and Consumers.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016
Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016
Umaka-Yummy Data: Where Providers and Consumers in Life Sciences Communicate with Each Other.
Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases.
Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data.
Proceedings of the Semantic Technology - 6th Joint International Conference, 2016
2015
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015
Proceedings of the 11th International Workshop on Scalable Semantic Web Knowledge Base Systems co-located with 14th International Semantic Web Conference (ISWC 2015), 2015
Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases.
Proceedings of the Semantic Technology - 5th Joint International Conference, 2015
2014
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.
Nucleic Acids Res., 2014
BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data.
J. Biomed. Semant., 2014
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomed. Semant., 2014
Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014
An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases.
Proceedings of the 3rd International Workshop on Intelligent Exploration of Semantic Data (IESD 2014) co-located with the 13th International Semantic Web Conference (ISWC 2014), 2014
2013
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia.
J. Biomed. Semant., 2013
2011
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant., 2011
Database J. Biol. Databases Curation, 2011
Building linked open data using approximate string matching methods and domain specific resources.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011
Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011
Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant., 2010
Proceedings of the Active Media Technology, 6th International Conference, 2010
2005
A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains.
IEEE Trans. Knowl. Data Eng., 2005
2004
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
Nucleic Acids Res., 2004
Finding the maximum common subgraph of a partial <i>k</i>-tree and a graph with a polynomially bounded number of spanning trees.
Inf. Process. Lett., 2004
Application of a new probabilistic model for recognizing complex patterns in glycans.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
2003
Mining biologically active patterns in metabolic pathways using microarray expression profiles.
SIGKDD Explor., 2003
Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees.
Proceedings of the Algorithms and Computation, 14th International Symposium, 2003
1999
Proceedings of the Computing and Combinatorics, 5th Annual International Conference, 1999
1997
An Approximation Algorithm for the Minimum Common Supertree Problem.
Nord. J. Comput., 1997