Asger Hobolth

According to our database, Asger Hobolth authored at least 15 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

On the Relation Between Autoencoders and Non-negative Matrix Factorization, and Their Application for Mutational Signature Extraction.

Ida Egendal, Rasmus Froberg Brøndum, Marta Pelizzola, Asger Hobolth, Martin Bøgsted

CoRR, 2024

2023

Model selection and robust inference of mutational signatures using Negative Binomial non-negative matrix factorization.

Marta Pelizzola, Ragnhild Laursen, Asger Hobolth

BMC Bioinform., December, 2023

PhaseTypeR: an R package for phase-type distributions in population genetics.

Iker Rivas-González, Lars Nørvang Andersen, Asger Hobolth

J. Open Source Softw., March, 2023

2022

A Sampling Algorithm to Compute the Set of Feasible Solutions for NonNegative Matrix Factorization with an Arbitrary Rank.

Ragnhild Laursen, Asger Hobolth

SIAM J. Matrix Anal. Appl., 2022

Graph-based algorithms for phase-type distributions.

Tobias Røikjer, Asger Hobolth, Kasper Munch

Stat. Comput., 2022

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora

Nat., 2020

2019

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation.

Malene Juul, Tobias Madsen, Qianyun Guo, Johanna Bertl, Asger Hobolth, Manolis Kellis, Jakob Skou Pedersen

Bioinform., 2019

2018

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data.

Johanna Bertl, Qianyun Guo, Malene Juul, Søren Besenbacher, Morten Muhlig Nielsen, Henrik Hornshøj, Jakob Skou Pedersen, Asger Hobolth

BMC Bioinform., 2018

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments.

Morten Muhlig Nielsen, Paula Tataru, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen

Algorithms Mol. Biol., 2018

2017

Significance evaluation in factor graphs.

Tobias Madsen, Asger Hobolth, Jens Ledet Jensen, Jakob Skou Pedersen

BMC Bioinform., 2017

2016

Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley's K-Function or Runs of Homozygosity?

Svend V. Nielsen, Simon Simonsen, Asger Hobolth

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

2011

Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains.

Paula Tataru, Asger Hobolth

BMC Bioinform., 2011

2005

Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene.

Asger Hobolth, Jens Ledet Jensen

J. Comput. Biol., 2005

Pseudo-Likelihood Analysis of Codon Substitution Models with Neighbor-Dependent Rates.

Ole F. Christensen, Asger Hobolth, Jens Ledet Jensen

J. Comput. Biol., 2005

2002

A Deformable Template Model, with Special Reference to Elliptical Templates.

Asger Hobolth, Jan Pedersen, Eva Bjørn Vedel Jensen

J. Math. Imaging Vis., 2002